RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 PTPRSQ13332 1948 aa10.74□□□□□ -0.69
SF3A1-207ENST00000471342 ANK1P16157 1881 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 ARL5CA6NH57 179 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 EOMESO95936 686 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 LDHAP00338 332 aaKnown RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 SLC9A1P19634 815 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 GCLMP48507 274 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 FMO5P49326 533 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 ZNF75DP51815 510 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 HTRA4P83105 476 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 MAN2A1Q16706 1144 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 FAM109BQ6ICB4 259 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 INTS8Q75QN2 995 aaKnown RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 SPRED2Q7Z698 418 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 UBR7Q8N806 425 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 C3orf58Q8NDZ4 430 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 TAS1R2Q8TE23 839 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 BCL7CQ8WUZ0 217 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 PDLIM2Q96JY6 352 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 ACAP3Q96P50 834 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 ERGIC2Q96RQ1 377 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 NAA15Q9BXJ9 866 aaKnown RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 VPS16Q9H269 839 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 GANQ9H2C0 597 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 NDST4Q9H3R1 872 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 CWH43Q9H720 699 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 PRDM5Q9NQX1 630 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 C1orf112Q9NSG2 853 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 TMEM161AQ9NX61 479 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 IFNKQ9P0W0 207 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 TUBGCP4Q9UGJ1 667 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 ARMCX3Q9UH62 379 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-207ENST00000471342 GIT1Q9Y2X7 761 aa10.73□□□□□ -0.69
SF3A1-207ENST00000471342 CHD9Q3L8U1 2897 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 ABHD14A-ACY1A0A1B0GW23 586 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 PIRO00625 290 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 GNA14O95837 355 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 PON1P27169 355 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 LRPAP1P30533 357 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 GTF2H1P32780 548 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 MLH1P40692 756 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 MAGEA10P43363 369 aaPredicted RBP10.72□□□□□ -0.69
SF3A1-207ENST00000471342 AARSP49588 968 aaKnown RBP eCLIP10.72□□□□□ -0.69
SF3A1-207ENST00000471342 GLRA4Q5JXX5 417 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 E4F1Q66K89 784 aaPredicted RBP10.72□□□□□ -0.69
SF3A1-207ENST00000471342 TWF2Q6IBS0 349 aaKnown RBP10.72□□□□□ -0.69
SF3A1-207ENST00000471342 PHLDB3Q6NSJ2 640 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 TRAPPC11Q7Z392 1133 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 WDR49Q8IV35 697 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 TMEM199Q8N511 208 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 HELQQ8TDG4 1101 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 KAT5Q92993 513 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 CCDC127Q96BQ5 260 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 TCHPQ9BT92 498 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 GOLGA2P5Q9HBQ8 144 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 METTL14Q9HCE5 456 aaKnown RBP10.72□□□□□ -0.69
SF3A1-207ENST00000471342 DERAQ9Y315 318 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 C2CD2Q9Y426 696 aa10.72□□□□□ -0.69
SF3A1-207ENST00000471342 CHD7Q9P2D1 2997 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 GTPBP10A4D1E9 387 aaKnown RBP10.71□□□□□ -0.69
SF3A1-207ENST00000471342 EVI5O60447 810 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ITGB1P05556 798 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 PFKMP08237 780 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ACTN1P12814 892 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ITGA4P13612 1032 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 RAB27AP51159 221 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 SCNN1GP51170 649 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 FPGSQ05932 587 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ARID5BQ14865 1188 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 SHHQ15465 462 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 GJB7Q6PEY0 223 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 OTOP2Q7RTS6 562 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 TMEM173Q86WV6 379 aaPredicted RBP10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ARHGEF19Q8IW93 802 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 COLGALT2Q8IYK4 626 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 RNF168Q8IYW5 571 aaPredicted RBP10.71□□□□□ -0.69
SF3A1-207ENST00000471342 SP7Q8TDD2 431 aaPredicted RBP10.71□□□□□ -0.69
SF3A1-207ENST00000471342 BAP1Q92560 729 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 TATDN2Q93075 761 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 KREMEN1Q96MU8 473 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 ANP32EQ9BTT0 268 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 HTATIP2Q9BUP3 242 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 APOL6Q9BWW8 343 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 VN1R3Q9BXE9 311 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 MTMR12Q9C0I1 747 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 SDCBP2Q9H190 292 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 NRDE2Q9H7Z3 1164 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 VRTNQ9H8Y1 702 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 RPF1Q9H9Y2 349 aaKnown RBP10.71□□□□□ -0.69
SF3A1-207ENST00000471342 TMEM8AQ9HCN3 771 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 TBC1D13Q9NVG8 400 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 MARCH5Q9NX47 278 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 FRMD4BQ9Y2L6 1034 aa10.71□□□□□ -0.69
SF3A1-207ENST00000471342 A0A1W2PQC6 194 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 LCHNA4D1U4 455 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 H0YGN5 161 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 IL18RAPO95256 599 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 AFPP02771 609 aaKnown RBP10.7□□□□□ -0.7
SF3A1-207ENST00000471342 DLATP10515 647 aaKnown RBP10.7□□□□□ -0.7
SF3A1-207ENST00000471342 EPB41P11171 864 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms