RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 CA4P22748 312 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SMARCA1P28370 1054 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 GRIA2P42262 883 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TXKP42681 527 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RXRGP48443 463 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 EIF2B2P49770 351 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 ASPHQ12797 758 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SPARCL1Q14515 664 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 PPP2R5EQ16537 467 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 GRAMD1BQ3KR37 738 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 USH1GQ495M9 461 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 NAALADL2Q58DX5 795 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 MDH1BQ5I0G3 518 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 AADACL2Q6P093 401 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 KLHDC10Q6PID8 442 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ZDHHC24Q6UX98 284 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TMTC3Q6ZXV5 915 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 NELFCDQ8IXH7 590 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 HIPK4Q8NE63 616 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ZCRB1Q8TBF4 217 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 GAB3Q8WWW8 586 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CLIP3Q96DZ5 547 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SPATA17Q96L03 361 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 AGAP3Q96P47 875 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SERPINB12Q96P63 405 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TMUB1Q9BVT8 246 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RNF26Q9BY78 433 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 ROPN1BQ9BZX4 212 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 KLHL4Q9C0H6 718 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SEMA6BQ9H3T3 888 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ROPN1Q9HAT0 212 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 TMOD2Q9NZR1 351 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RPL26L1Q9UNX3 145 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 MTMR7Q9Y216 660 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 PRR36Q9H6K5 1346 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TRPM3Q9HCF6 1732 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 CCDC194A0A1B0GVG4 234 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ARHGAP10A1A4S6 786 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 FAM47DPA6NHR8 397 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ARHGAP42A6NI28 874 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 POC1B-GALNT4F8VUJ3 575 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RBAK-RBAKDNI3L0D1 243 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 EYA2O00167 538 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 EIF3FO00303 357 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 FBP2O00757 339 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 PLEKHA8P1O95397 391 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TFPTP0C1Z6 253 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 NEK2P51955 445 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 GEMIN4P57678 1058 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 ARPC4P59998 168 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 AMPD3Q01432 767 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 DHX34Q14147 1143 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 TRIP13Q15645 432 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 ZNF787Q6DD87 383 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CYP4F22Q6NT55 531 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CCDC137Q6PK04 289 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 CLEC4GQ6UXB4 293 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RGS9BPQ6ZS82 235 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ATG9AQ7Z3C6 839 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CLNKQ7Z7G1 428 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CABP7Q86V35 215 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 C4orf33Q8N1A6 199 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 LRRC43Q8N309 656 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 OR6Y1Q8NGX8 325 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 FNDC8Q8TC99 324 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SH3RF3Q8TEJ3 882 aaPredicted RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 SREK1Q8WXA9 508 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 JDP2Q8WYK2 163 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 GFM2Q969S9 779 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 NSL1Q96IY1 281 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CCDC77Q9BR77 488 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 THTPAQ9BU02 230 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CENPOQ9BU64 300 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 PHF20Q9BVI0 1012 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TRIM9Q9C026 710 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 CNNM2Q9H8M5 875 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 OSGEPQ9NPF4 335 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 TIMMDC1Q9NPL8 285 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ARL8BQ9NVJ2 186 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 HEY2Q9UBP5 337 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 STARD13Q9Y3M8 1113 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 IVNS1ABPQ9Y6Y0 642 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ZNF532Q9HCE3 1301 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ANKRD62A6NC57 917 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 B2RBV5 119 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SPECC1L-ADORA2AF8WAN1 911 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 H3BRJ5 948 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 STRNO43815 780 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ATP9BO43861 1147 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 COL6A2P12110 1019 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 ACTN1P12814 892 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 IDO1P14902 403 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 HOXC9P31274 260 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 NOP14P78316 857 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 ITGA9Q13797 1035 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 RRP1BQ14684 758 aaKnown RBP4.48□□□□□ -1.69
VPS50-210ENST00000471188 LPIN1Q14693 890 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 SMUG1Q53HV7 270 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 MFSD5Q6N075 450 aa4.48□□□□□ -1.69
VPS50-210ENST00000471188 BRICD5Q6PL45 260 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms