RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 FGF13Q92913 245 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 ACO2Q99798 780 aaKnown RBP16.88■□□□□ 0.29
SKA3-204ENST00000462482 TMEM134Q9H6X4 195 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 NUB1Q9Y5A7 615 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 ARID2Q68CP9 1835 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 H7C4K7 107 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 HIP1RO75146 1068 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 SEC24BO95487 1268 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 LRG1P02750 347 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 EDN1P05305 212 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 DCNP07585 359 aaKnown RBP16.87■□□□□ 0.29
SKA3-204ENST00000462482 MCF2P10911 925 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 OSTNP61366 133 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 GPC5P78333 572 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 FOXK2Q01167 660 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 STRN3Q13033 797 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 NBR1Q14596 966 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 ECM1Q16610 540 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 UPP1Q16831 310 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 C4orf32Q8N8J7 132 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 IGSF22Q8N9C0 903 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 ACAP3Q96P50 834 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 TIPINQ9BVW5 301 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 CDT1Q9H211 546 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 CXCL16Q9H2A7 254 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 C17orf75Q9HAS0 396 aa16.87■□□□□ 0.29
SKA3-204ENST00000462482 MRPS23Q9Y3D9 190 aaKnown RBP16.87■□□□□ 0.29
SKA3-204ENST00000462482 DENND4AQ7Z401 1863 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 E9PMD0 336 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 PODXLO00592 558 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 PRRG1O14668 218 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 U2AF2P26368 475 aaKnown RBP eCLIP16.86■□□□□ 0.29
SKA3-204ENST00000462482 TKTP29401 623 aaKnown RBP16.86■□□□□ 0.29
SKA3-204ENST00000462482 PRPHP41219 470 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 SMTNP53814 917 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 ZRSR1Q15695 479 aaKnown RBP16.86■□□□□ 0.29
SKA3-204ENST00000462482 ST13P5Q8NFI4 369 aaPredicted RBP16.86■□□□□ 0.29
SKA3-204ENST00000462482 FGF14Q92915 247 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 GOLGA2P5Q9HBQ8 144 aa16.86■□□□□ 0.29
SKA3-204ENST00000462482 I3L4J1 428 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 LMNAP02545 664 aaKnown RBP16.85■□□□□ 0.29
SKA3-204ENST00000462482 HARSP12081 509 aaKnown RBP16.85■□□□□ 0.29
SKA3-204ENST00000462482 RPL9P32969 192 aaKnown RBP16.85■□□□□ 0.29
SKA3-204ENST00000462482 BRCC3P46736 316 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 ARPP19P56211 112 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 STARD6P59095 220 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 PRKCQQ04759 706 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 MCTP1Q6DN14 999 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 MPZL3Q6UWV2 235 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 C1orf210Q8IVY1 113 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 PJA1Q8NG27 643 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 ZNF461Q8TAF7 563 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 ITFG1Q8TB96 612 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 CDK5RAP3Q96JB5 506 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 SNX27Q96L92 541 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 TARS2Q9BW92 718 aaKnown RBP16.85■□□□□ 0.29
SKA3-204ENST00000462482 BCO2Q9BYV7 579 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 GDE1Q9NZC3 331 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 ARHGAP28Q9P2N2 729 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 PCDHB6Q9Y5E3 794 aa16.85■□□□□ 0.29
SKA3-204ENST00000462482 KANSL1LA0AUZ9 987 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 SYN3O14994 580 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 PTPN2P17706 415 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 MATR3P43243 847 aaKnown RBP eCLIP16.84■□□□□ 0.29
SKA3-204ENST00000462482 SNW1Q13573 536 aaKnown RBP16.84■□□□□ 0.29
SKA3-204ENST00000462482 MLF2Q15773 248 aaPredicted RBP16.84■□□□□ 0.29
SKA3-204ENST00000462482 SLC44A4Q53GD3 710 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 VARS2Q5ST30 1063 aaKnown RBP16.84■□□□□ 0.29
SKA3-204ENST00000462482 RINT1Q6NUQ1 792 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 NPAS3Q8IXF0 933 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 ELMOD1Q8N336 334 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 KCTD17Q8N5Z5 321 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 CEP120Q8N960 986 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 ING5Q8WYH8 240 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 KXD1Q9BQD3 176 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 RPP25Q9BUL9 199 aaKnown RBP16.84■□□□□ 0.29
SKA3-204ENST00000462482 FOXQ1Q9C009 403 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 HCFC1R1Q9NWW0 138 aa16.84■□□□□ 0.29
SKA3-204ENST00000462482 DNMT3BQ9UBC3 853 aaKnown RBP16.84■□□□□ 0.29
SKA3-204ENST00000462482 PP2D1A8MPX8 630 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 H0YCG3 227 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 ZNF197O14709 1029 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 SLC16A4O15374 487 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 NCAM2O15394 837 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 TOM1L1O75674 476 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 RHOP08100 348 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 KCNE1P15382 129 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 MARCKSP29966 332 aaPredicted RBP16.83■□□□□ 0.28
SKA3-204ENST00000462482 ROR1Q01973 937 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 UBXN2BQ14CS0 331 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 RILPL1Q5EBL4 403 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 XKR4Q5GH76 650 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 SLC8B1Q6J4K2 584 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 ALKAL1Q6UXT8 129 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 RSPO2Q6UXX9 243 aaPredicted RBP16.83■□□□□ 0.28
SKA3-204ENST00000462482 C3orf58Q8NDZ4 430 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 APPL2Q8NEU8 664 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 SPIRE2Q8WWL2 714 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 MCRS1Q96EZ8 462 aa16.83■□□□□ 0.28
SKA3-204ENST00000462482 HINFPQ9BQA5 517 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms