RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TDRD3Q9H7E2 651 aaKnown RBP5.34□□□□□ -1.55
CSMD3-205ENST00000462254 NMRK2Q9NPI5 230 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 ATP8A2Q9NTI2 1148 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 APEX2Q9UBZ4 518 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 SAP30BPQ9UHR5 308 aaKnown RBP5.34□□□□□ -1.55
CSMD3-205ENST00000462254 FBXO2Q9UK22 296 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-205ENST00000462254 TMEM59LQ9UK28 342 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 HDAC9Q9UKV0 1011 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 FHOD1Q9Y613 1164 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 DGKBQ9Y6T7 804 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 UTRNP46939 3433 aa5.34□□□□□ -1.55
CSMD3-205ENST00000462254 COL11A1P12107 1806 aaPredicted RBP5.34□□□□□ -1.55
CSMD3-205ENST00000462254 SMCHD1A6NHR9 2005 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CNTNAP1P78357 1384 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ASTN2O75129 1339 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CLRN2A0PK11 232 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 WNT10BO00744 389 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ZNF213O14771 459 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 DLX3O60479 287 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PAPLNO95428 1278 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ZGLP1P0C6A0 271 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 RBP3P10745 1247 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 VAV1P15498 845 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 HSPA6P17066 643 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ITGB5P18084 799 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CASTP20810 708 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 RPL10P27635 214 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 EPS15P42566 896 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ECE1P42892 770 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 LSSP48449 732 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 RENBPP51606 427 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ALDH5A1P51649 535 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PPARAQ07869 468 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 MYBPC2Q14324 1141 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PPP2R5DQ14738 602 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 RABEP1Q15276 862 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PCBP2Q15366 365 aaKnown RBP eCLIP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 DLGAP5Q15398 846 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 SKOR2Q2VWA4 1001 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ATP13A4Q4VNC1 1196 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 SBK1Q52WX2 424 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 XRRA1Q6P2D8 792 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 RNF111Q6ZNA4 994 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ADAT2Q7Z6V5 191 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PNMA8AQ86V59 439 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 GPC2Q8N158 579 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CCDC89Q8N998 374 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 BVESQ8NE79 360 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PARD3BQ8TEW8 1205 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 SKA1Q96BD8 255 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 AHCYL2Q96HN2 611 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 FAXDC2Q96IV6 333 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 MRGPRX3Q96LB0 322 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 TCEANC2Q96MN5 208 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 JAKMIP1Q96N16 626 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 TTC14Q96N46 770 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 G6PC3Q9BUM1 346 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 LGR4Q9BXB1 951 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 IDI2Q9BXS1 227 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 GBP3Q9H0R5 595 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 OSBPL5Q9H0X9 879 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 MYOZ2Q9NPC6 264 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 INCENPQ9NQS7 918 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 USP40Q9NVE5 1235 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 PRR13Q9NZ81 148 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 GPRC5DQ9NZD1 345 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ARPP21Q9UBL0 812 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ZNF70Q9UC06 446 aaPredicted RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CTNNA3Q9UI47 895 aa5.33□□□□□ -1.56
CSMD3-205ENST00000462254 CNOT7Q9UIV1 285 aaKnown RBP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.33□□□□□ -1.56
CSMD3-205ENST00000462254 ATRNL1Q5VV63 1379 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 DDTLA6NHG4 134 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ZNF891A8MT65 544 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 CBX4O00257 560 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 NOP56O00567 594 aaKnown RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 TBX1O43435 398 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ITGA4P13612 1032 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ZKSCAN1P17029 563 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 RHCEP18577 417 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 BMP8BP34820 402 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 TRHRP34981 398 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 GDNFP39905 211 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 PLCD1P51178 756 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 GTF2A2P52657 109 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 USP14P54578 494 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ANTXR2P58335 489 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 OCRLQ01968 901 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 RHDQ02161 417 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 TCP10Q12799 353 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 MAP4K2Q12851 820 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 KRT32Q14532 448 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ELF2Q15723 593 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 TBC1D10BQ4KMP7 808 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 AKNAD1Q5T1N1 836 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 C12orf60Q5U649 245 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 MCTP1Q6DN14 999 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 B3GNT9Q6UX72 402 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 RUFY3Q7L099 469 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 CYB5R4Q7L1T6 521 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms