RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 CXCL16Q9H2A7 254 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 TMEM134Q9H6X4 195 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 SH2B1Q9NRF2 756 aaPredicted RBP23.65■■□□□ 1.38
CPNE1-220ENST00000458038 DLGAP2Q9P1A6 1054 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 DNM3Q9UQ16 869 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 USP20Q9Y2K6 914 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 RBM19Q9Y4C8 960 aaKnown RBP23.65■■□□□ 1.38
CPNE1-220ENST00000458038 FRYLO94915 3013 aa23.65■■□□□ 1.38
CPNE1-220ENST00000458038 CITO14578 2027 aa23.64■■□□□ 1.38
CPNE1-220ENST00000458038 LAD1O00515 517 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 LMNAP02545 664 aaKnown RBP23.64■■□□□ 1.37
CPNE1-220ENST00000458038 GRM5P41594 1212 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 CLCNKBP51801 687 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 GPC5P78333 572 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 NTHL1P78549 312 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 PFKPQ01813 784 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 PARM1Q6UWI2 310 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 C1orf210Q8IVY1 113 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 IGSF22Q8N9C0 903 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 KIFC3Q9BVG8 833 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 C17orf75Q9HAS0 396 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 DDX19AQ9NUU7 478 aaKnown RBP23.64■■□□□ 1.37
CPNE1-220ENST00000458038 KCNG1Q9UIX4 513 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 MIA3Q5JRA6 1907 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 FANCMQ8IYD8 2048 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 NOTCH4Q99466 2003 aa23.64■■□□□ 1.37
CPNE1-220ENST00000458038 SMIM28A0A1B0GU29 152 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 CCDC169A6NNP5 214 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 PRKCQQ04759 706 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 DMP1Q13316 513 aaPredicted RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 ECM1Q16610 540 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 PABPC1LQ4VXU2 614 aaKnown RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 XKR4Q5GH76 650 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 ALKAL1Q6UXT8 129 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 RSPO2Q6UXX9 243 aaPredicted RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 PJA1Q8NG27 643 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 DRC1Q96MC2 740 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 ACO2Q99798 780 aaKnown RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 MRPL4Q9BYD3 311 aaKnown RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 OSBPL6Q9BZF3 934 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 AVENQ9NQS1 362 aaPredicted RBP23.63■■□□□ 1.37
CPNE1-220ENST00000458038 CDY1Q9Y6F8 540 aa23.63■■□□□ 1.37
CPNE1-220ENST00000458038 DCNP07585 359 aaKnown RBP23.62■■□□□ 1.37
CPNE1-220ENST00000458038 U2AF2P26368 475 aaKnown RBP eCLIP23.62■■□□□ 1.373e-26■□□□□ 9.9
CPNE1-220ENST00000458038 NPTX2P47972 431 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 GLRA4Q5JXX5 417 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 SPECC1Q5M775 1068 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 KRT79Q5XKE5 535 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 ZNF461Q8TAF7 563 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 ITFG1Q8TB96 612 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 KCNG4Q8TDN1 519 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 SNX29Q8TEQ0 813 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 RPP25Q9BUL9 199 aaKnown RBP23.62■■□□□ 1.37
CPNE1-220ENST00000458038 TIPINQ9BVW5 301 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 PTPRHQ9HD43 1115 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 GDE1Q9NZC3 331 aa23.62■■□□□ 1.37
CPNE1-220ENST00000458038 DCHS1Q96JQ0 3298 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 KANSL1LA0AUZ9 987 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 TKTP29401 623 aaKnown RBP23.61■■□□□ 1.37
CPNE1-220ENST00000458038 RPL9P32969 192 aaKnown RBP23.61■■□□□ 1.37
CPNE1-220ENST00000458038 PEX3P56589 373 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 PTGDRQ13258 359 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 ZNF568Q3ZCX4 644 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 SLC8B1Q6J4K2 584 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 CD300LGQ6UXG3 332 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 ERMP1Q7Z2K6 904 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 DDX23Q9BUQ8 820 aaKnown RBP23.61■■□□□ 1.37
CPNE1-220ENST00000458038 CDT1Q9H211 546 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 POLD4Q9HCU8 107 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 ARHGAP28Q9P2N2 729 aa23.61■■□□□ 1.37
CPNE1-220ENST00000458038 DNMT3BQ9UBC3 853 aaKnown RBP23.61■■□□□ 1.37
CPNE1-220ENST00000458038 OTOGLQ3ZCN5 2332 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 ARHGEF37A1IGU5 675 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 SYN3O14994 580 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 MCF2P10911 925 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 KCNE1P15382 129 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 ELF1P32519 619 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 PRPHP41219 470 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 MAGEA9P43362 315 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 SLC44A4Q53GD3 710 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 KCTD17Q8N5Z5 321 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 ACAP3Q96P50 834 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 KMT5AQ9NQR1 393 aa23.6■■□□□ 1.37
CPNE1-220ENST00000458038 MRPS23Q9Y3D9 190 aaKnown RBP23.6■■□□□ 1.37
CPNE1-220ENST00000458038 H7C4K7 107 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 HIP1RO75146 1068 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 SP9P0CG40 484 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 PTPN2P17706 415 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 MLF2Q15773 248 aaPredicted RBP23.59■■□□□ 1.37
CPNE1-220ENST00000458038 NPAS3Q8IXF0 933 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 C3orf58Q8NDZ4 430 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 NELL2Q99435 816 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 NTPCRQ9BSD7 190 aaKnown RBP23.59■■□□□ 1.37
CPNE1-220ENST00000458038 TCHPQ9BT92 498 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 BCO2Q9BYV7 579 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 HCFC1R1Q9NWW0 138 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 DMXL1Q9Y485 3027 aa23.59■■□□□ 1.37
CPNE1-220ENST00000458038 MYH11P35749 1972 aa23.58■■□□□ 1.37
CPNE1-220ENST00000458038 CACNA1AO00555 2505 aa23.58■■□□□ 1.37
CPNE1-220ENST00000458038 ECI2O75521 394 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms