RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 HCN4Q9Y3Q4 1203 aa13.18□□□□□ -0.3
USP40-210ENST00000454354 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 TGM5O43548 720 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 RPL17P18621 184 aaKnown RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 SP100P23497 879 aaPredicted RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 MARCKSP29966 332 aaPredicted RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 ABCD1P33897 745 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 DDIT3P35638 169 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 OSTNP61366 133 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 SLC39A14Q15043 492 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 PSMD5Q16401 504 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 FAM171A1Q5VUB5 890 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 DCLRE1AQ6PJP8 1040 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 PRSS55Q6UWB4 352 aaPredicted RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 TRIM67Q6ZTA4 783 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 CCDC149Q6ZUS6 474 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 BMP8AQ7Z5Y6 402 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 TDRD5Q8NAT2 981 aaKnown RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 C3orf58Q8NDZ4 430 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 DDX27Q96GQ7 796 aaKnown RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 ZMAT2Q96NC0 199 aaKnown RBP13.17□□□□□ -0.3
USP40-210ENST00000454354 USP28Q96RU2 1077 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 CLSTN3Q9BQT9 956 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 HAPLN2Q9GZV7 340 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 TSHZ2Q9NRE2 1034 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 ZDHHC7Q9NXF8 308 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 FBXW11Q9UKB1 542 aa13.17□□□□□ -0.3
USP40-210ENST00000454354 K7ENM7 598 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 CLDN3O15551 220 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 FAM189A1O60320 539 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 TBCAO75347 108 aaKnown RBP13.16□□□□□ -0.3
USP40-210ENST00000454354 B3GAT3O94766 335 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 FAM13AO94988 1023 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 HARSP12081 509 aaKnown RBP13.16□□□□□ -0.3
USP40-210ENST00000454354 NASPP49321 788 aaPredicted RBP13.16□□□□□ -0.3
USP40-210ENST00000454354 GTF2BQ00403 316 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 SIGLEC14Q08ET2 396 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 DHX8Q14562 1220 aaKnown RBP13.16□□□□□ -0.3
USP40-210ENST00000454354 SPECC1Q5M775 1068 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 HFE2Q6ZVN8 426 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 PALB2Q86YC2 1186 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 PLCD3Q8N3E9 789 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 MYCT1Q8N699 235 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 ZNF707Q96C28 371 aaPredicted RBP13.16□□□□□ -0.3
USP40-210ENST00000454354 CLIC6Q96NY7 704 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 ST6GALNAC4Q9H4F1 302 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 MTRRQ9UBK8 725 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 CCDC39Q9UFE4 941 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 TBX20Q9UMR3 447 aa13.16□□□□□ -0.3
USP40-210ENST00000454354 PIEZO1Q92508 2521 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 SCN1AP35498 2009 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 CCDC195A0A1B0GUA6 201 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 TMEM221A6NGB7 291 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 M0R296 226 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 PODXLO00592 558 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 HNRNPDLO14979 420 aaKnown RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 TRAPPC3O43617 180 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 TRAK2O60296 914 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 RFPL2O75678 378 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 KRT18P05783 430 aaKnown RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 IGFBP6P24592 240 aaPredicted RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 RPL9P32969 192 aaKnown RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 TXLNAP40222 546 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 SLC10A6Q3KNW5 377 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 OTOP3Q7RTS5 596 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 MAP4K3Q8IVH8 894 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 GLYCTKQ8IVS8 523 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 KRI1Q8N9T8 703 aaKnown RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 KREMEN2Q8NCW0 462 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 ACSF2Q96CM8 615 aaPredicted RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 ASIC4Q96FT7 647 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 BICD1Q96G01 975 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 PLEKHA5Q9HAU0 1116 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 WDR6Q9NNW5 1121 aaKnown RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 SORCS3Q9UPU3 1222 aa13.15□□□□□ -0.3
USP40-210ENST00000454354 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.15□□□□□ -0.3
USP40-210ENST00000454354 CLUHO75153 1309 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 TTC26A0AVF1 554 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 ZMYND10O75800 440 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 CLTAP09496 248 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 SPATA31D3P0C874 917 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 CXCL8P10145 99 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 TKTP29401 623 aaKnown RBP13.14□□□□□ -0.31
USP40-210ENST00000454354 HOXA9P31269 272 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 BRCC3P46736 316 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 LIG4P49917 911 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 CEBPZQ03701 1054 aaKnown RBP13.14□□□□□ -0.31
USP40-210ENST00000454354 MTMR3Q13615 1198 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 KYAT1Q16773 422 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 SEZ6Q53EL9 994 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 RRAGBQ5VZM2 374 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 SLC39A4Q6P5W5 647 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 SPATA31D4Q6ZUB0 917 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 CEP57Q86XR8 500 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 HSCBQ8IWL3 235 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 UBALD2Q8IYN6 164 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 SMG7Q92540 1137 aaKnown RBP13.14□□□□□ -0.31
USP40-210ENST00000454354 C18orf25Q96B23 403 aaPredicted RBP13.14□□□□□ -0.31
USP40-210ENST00000454354 MFSD14AQ96MC6 490 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms