RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 AJAP1Q9UKB5 411 aaPredicted RBP5.21□□□□□ -1.58
USP40-209ENST00000452724 SORCS3Q9UPU3 1222 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 PCDHA13Q9Y5I0 950 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 TSPAN6O43657 245 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 DTNBO60941 627 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 GPR32O75388 356 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 RHOBTB3O94955 611 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 POU2F2P09086 479 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 HMGB1P09429 215 aaKnown RBP5.2□□□□□ -1.58
USP40-209ENST00000452724 IL2RBP14784 551 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 ALOX15P16050 662 aaPredicted RBP5.2□□□□□ -1.58
USP40-209ENST00000452724 PDCP20941 246 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 CYP2C19P33261 490 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 FLT3LGP49771 235 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 SP140Q13342 867 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 FAM47AQ5JRC9 791 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 C1QL3Q5VWW1 255 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 LAIR1Q6GTX8 287 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 PPP4R3AQ6IN85 833 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 KCNV1Q6PIU1 500 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 USP45Q70EL2 814 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 CASKIN2Q8WXE0 1202 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 STON2Q8WXE9 905 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 KAT5Q92993 513 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 ZG16BQ96DA0 208 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 TMEM140Q9NV12 185 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.2□□□□□ -1.58
USP40-209ENST00000452724 FZD1Q9UP38 647 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 DMRT1Q9Y5R6 373 aa5.2□□□□□ -1.58
USP40-209ENST00000452724 ATRNL1Q5VV63 1379 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 B5MCH6 92 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 WNT10BO00744 389 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 FOXN1O15353 648 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 SGTAO43765 313 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 SCAF4O95104 1147 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 ABHD16AO95870 558 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 AMY1AP04745 511 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 ITGB1P05556 798 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 CDC42EP1Q00587 391 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 IFIT1BQ5T764 474 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 FAM102BQ5T8I3 360 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 DOK3Q7L591 496 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 CATIPQ7Z7H3 387 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 MRGPREQ86SM8 312 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 RSPH3Q86UC2 560 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 PRR18Q8N4B5 295 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 ZGPATQ8N5A5 531 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 PROKR1Q8TCW9 393 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 RAB24Q969Q5 203 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 AIFM3Q96NN9 605 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 GTPBP4Q9BZE4 634 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 MOCS1Q9NZB8 636 aa5.19□□□□□ -1.58
USP40-209ENST00000452724 NOB1Q9ULX3 412 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 CFAP20Q9Y6A4 193 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 MYBBP1AQ9BQG0 1328 aaKnown RBP5.19□□□□□ -1.58
USP40-209ENST00000452724 PRR5-ARHGAP8B1AHC4 643 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 TEX33O43247 280 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 OFD1O75665 1012 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 RPLP2P05387 115 aaKnown RBP5.18□□□□□ -1.58
USP40-209ENST00000452724 RAP2AP10114 183 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 DDCP20711 480 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 FPR1P21462 350 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 PCSK1P29120 753 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 ALDH1A3P47895 512 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 FSTL1Q12841 308 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 TARDBPQ13148 414 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP40-209ENST00000452724 MTM1Q13496 603 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 VPS72Q15906 364 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 TIGD2Q4W5G0 525 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 AFMIDQ63HM1 303 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 ANKS6Q68DC2 871 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 CXorf57Q6NSI4 855 aaKnown RBP5.18□□□□□ -1.58
USP40-209ENST00000452724 LRRC55Q6ZSA7 311 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 TTC7BQ86TV6 843 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 XYLT1Q86Y38 959 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 FMNL3Q8IVF7 1028 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 DNAJC10Q8IXB1 793 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 DRC7Q8IY82 874 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 NSUN6Q8TEA1 469 aaKnown RBP5.18□□□□□ -1.58
USP40-209ENST00000452724 TMX3Q96JJ7 454 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 LRGUKQ96M69 825 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 DCLRE1CQ96SD1 692 aaKnown RBP5.18□□□□□ -1.58
USP40-209ENST00000452724 LSM14BQ9BX40 385 aaKnown RBP5.18□□□□□ -1.58
USP40-209ENST00000452724 KCNH6Q9H252 994 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 PCDHB1Q9Y5F3 818 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 ACTL7AQ9Y615 435 aa5.18□□□□□ -1.58
USP40-209ENST00000452724 GRXCR1A8MXD5 290 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 CXorf49A8MYA2 514 aaPredicted RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 PJA2O43164 708 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 PARNO95453 639 aaKnown RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 U2AF1L5P0DN76 240 aaPredicted RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 HSPA6P17066 643 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 LAG3P18627 525 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 LPOP22079 712 aaPredicted RBP5.17□□□□□ -1.58
USP40-209ENST00000452724 FXR1P51114 621 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP40-209ENST00000452724 ATP8B2P98198 1209 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 U2AF1Q01081 240 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP40-209ENST00000452724 DSC2Q02487 901 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 GTF2H3Q13889 308 aa5.17□□□□□ -1.58
USP40-209ENST00000452724 PGS1Q32NB8 556 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms