RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 KYAT1Q16773 422 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 UPP1Q16831 310 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 SEZ6Q53EL9 994 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 RTP2Q5QGT7 225 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 ALKAL1Q6UXT8 129 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-210ENST00000449684 C15orf39Q6ZRI6 1047 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 GPR149Q86SP6 731 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 TDRD5Q8NAT2 981 aaKnown RBP16.94■□□□□ 0.3
LIMS1-210ENST00000449684 HDAC7Q8WUI4 952 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 ACSF2Q96CM8 615 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-210ENST00000449684 PLEKHA4Q9H4M7 779 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 TFIP11Q9UBB9 837 aaKnown RBP16.94■□□□□ 0.3
LIMS1-210ENST00000449684 HCN4Q9Y3Q4 1203 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 NUB1Q9Y5A7 615 aa16.94■□□□□ 0.3
LIMS1-210ENST00000449684 TMEM189-UBE2V1I3L0A0 370 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 PODXLO00592 558 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 ABLIM1O14639 778 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 SPTLC2O15270 562 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 TGM5O43548 720 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 CLTAP09496 248 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 KCNE1P15382 129 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 NMT1P30419 496 aaKnown RBP16.93■□□□□ 0.3
LIMS1-210ENST00000449684 FOXD4L6Q3SYB3 417 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-210ENST00000449684 XKR4Q5GH76 650 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 FOXD4L3Q6VB84 417 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-210ENST00000449684 CCDC149Q6ZUS6 474 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 PLCD3Q8N3E9 789 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 PIK3R5Q8WYR1 880 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 DDX12PQ92771 950 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 EDAQ92838 391 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 CNTN3Q9P232 1028 aa16.93■□□□□ 0.3
LIMS1-210ENST00000449684 TRIP11Q15643 1979 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 C1RP00736 705 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 IDEP14735 1019 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 RPL9P32969 192 aaKnown RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 NASPP49321 788 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 PPP2R3AQ06190 1150 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 LIN9Q5TKA1 542 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 PDILTQ8N807 584 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 LINC00301Q8NCQ3 95 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 KREMEN2Q8NCW0 462 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 CMASQ8NFW8 434 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 LNX1Q8TBB1 728 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 SMG7Q92540 1137 aaKnown RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 FAM212AQ96EL1 285 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 ZMAT2Q96NC0 199 aaKnown RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 MRPL44Q9H9J2 332 aaKnown RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 RPF1Q9H9Y2 349 aaKnown RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 PLEKHA5Q9HAU0 1116 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 C11orf16Q9NQ32 467 aa16.92■□□□□ 0.3
LIMS1-210ENST00000449684 MORC2Q9Y6X9 1032 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-210ENST00000449684 CITO14578 2027 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 C2CD4DB7Z1M9 353 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 TULP1O00294 542 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-210ENST00000449684 OGTO15294 1046 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 XPOTO43592 962 aaKnown RBP16.91■□□□□ 0.3
LIMS1-210ENST00000449684 RFPL2O75678 378 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 ZSCAN22P10073 491 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-210ENST00000449684 CXCL8P10145 99 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 GAP43P17677 238 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 BRCC3P46736 316 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 SOX4Q06945 474 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-210ENST00000449684 SLC10A6Q3KNW5 377 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 CYP26C1Q6V0L0 522 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 ANKS3Q6ZW76 656 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 OTOP3Q7RTS5 596 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 STAMQ92783 540 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 C18orf25Q96B23 403 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-210ENST00000449684 KIF12Q96FN5 646 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 CLSTN3Q9BQT9 956 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 MSTO1Q9BUK6 570 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 SEL1LQ9UBV2 794 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 USTQ9Y2C2 406 aa16.91■□□□□ 0.3
LIMS1-210ENST00000449684 MYMKA6NI61 221 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 I3L4J1 428 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 PPP6R2O75170 966 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 YEATS4O95619 227 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 PIGRP01833 764 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 OR1D2P34982 312 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 ZXDAP98168 799 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 GTF2BQ00403 316 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 SPAG1Q07617 926 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 PTPN21Q16825 1174 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 ZC2HC1CQ53FD0 456 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-210ENST00000449684 SLFN12LQ6IEE8 588 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 SFR1Q86XK3 245 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 MAP4K3Q8IVH8 894 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 KCNN1Q92952 543 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 LRRC27Q9C0I9 530 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 ZDHHC7Q9NXF8 308 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 TBC1D7Q9P0N9 293 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 EXOC7Q9UPT5 735 aa16.9■□□□□ 0.3
LIMS1-210ENST00000449684 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-210ENST00000449684 CUTAO60888 179 aa16.89■□□□□ 0.29
LIMS1-210ENST00000449684 GCNT3O95395 438 aa16.89■□□□□ 0.29
LIMS1-210ENST00000449684 F13A1P00488 732 aa16.89■□□□□ 0.29
LIMS1-210ENST00000449684 FGFR3P22607 806 aa16.89■□□□□ 0.29
LIMS1-210ENST00000449684 TKTP29401 623 aaKnown RBP16.89■□□□□ 0.29
LIMS1-210ENST00000449684 GBP2P32456 591 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms