RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SESTD1Q86VW0 696 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ARMC8Q8IUR7 673 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TMEM57Q8N5G2 664 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 WDR48Q8TAF3 677 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 C3orf49Q96BT1 292 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RNF125Q96EQ8 232 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 FEM1CQ96JP0 617 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CLPTM1LQ96KA5 538 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 FAM167AQ96KS9 214 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 FCRL3Q96P31 734 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 EYA3Q99504 573 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 LBHD1Q9BQE6 289 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 NOD2Q9HC29 1040 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 SLAMF7Q9NQ25 335 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TMOD4Q9NZQ9 345 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 STK17AQ9UEE5 414 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CNPY2Q9Y2B0 182 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RRP15Q9Y3B9 282 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 CDC14CA4D256 554 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TAF4O00268 1085 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FOXP2O15409 715 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ACTL6BO94805 426 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PRPF6O94906 941 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 JUPP14923 745 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 YBX3P16989 372 aaKnown RBP eCLIP2.57□□□□□ -28e-7■■□□□ 12.2
CCDC88A-208ENST00000444458 RAB6AP20340 208 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PGM1P36871 562 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RPP30P78346 268 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 SCARB2Q14108 478 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RAB30Q15771 203 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 INF2Q27J81 1249 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FIGNQ5HY92 759 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TTC38Q5R3I4 469 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ZNF783Q6ZMS7 281 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ZNF598Q86UK7 904 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 NLRP14Q86W24 1093 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 EPHX4Q8IUS5 362 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CPOQ8IVL8 374 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CEP97Q8IW35 865 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 KCTD6Q8NC69 237 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SIMC1Q8NDZ2 872 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ZNF845Q96IR2 970 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 SNX22Q96L94 193 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FBXL18Q96ME1 805 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RABEP2Q9H5N1 569 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PLSCR4Q9NRQ2 329 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MARCH2Q9P0N8 246 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MYO1AQ9UBC5 1043 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ANAPC5Q9UJX4 755 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PCOLCE2Q9UKZ9 415 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 DAGLAQ9Y4D2 1042 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PCDHGB5Q9Y5G0 923 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GPRASP1Q5JY77 1395 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 A8MV72 311 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 H0Y3Z8 333 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 INO80B-WBP1J3KQ70 363 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 BUB1BO60566 1050 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 FKTNO75072 461 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PCDH8O95206 1070 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 EOMESO95936 686 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 IGHDP01880 384 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SYN1P17600 705 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TDO2P48775 406 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GALK1P51570 392 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ACTR2P61160 394 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 DLG4P78352 724 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ANKRD1Q15327 319 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SEC23AQ15436 765 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FAM182BQ5T319 152 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ZNF468Q5VIY5 522 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 CCDC73Q6ZRK6 1079 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RTL10Q7L3V2 364 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RNF152Q8N8N0 203 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 OR14C36Q8NHC7 312 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GSDMBQ8TAX9 411 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SPPL3Q8TCT6 385 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 WHAMMQ8TF30 809 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TAF4BQ92750 862 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 STAMQ92783 540 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MAML3Q96JK9 1138 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 VRK1Q99986 396 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 WNT8AQ9H1J5 351 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SEMA4AQ9H3S1 761 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CHODLQ9H9P2 273 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 VEZTQ9HBM0 779 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 EIF2B4Q9UI10 523 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 MYO15BQ96JP2 1530 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CCDC78A2IDD5 438 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 WTIPA6NIX2 430 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 NT5C1B-RDH14C9J2C7 533 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MYO1CO00159 1063 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MT-ND3P03897 115 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 BMP1P13497 986 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CPA1P15085 419 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SMPD1P17405 629 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CD68P34810 354 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 HOXD13P35453 343 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 HK3P52790 923 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 RARSP54136 660 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 IFI35P80217 286 aaPredicted RBP2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms