RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.48□□□□□ -0.41
COL28A1-203ENST00000435823 STYXL1Q9Y6J8 313 aa12.48□□□□□ -0.41
COL28A1-203ENST00000435823 TRIP11Q15643 1979 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 C2orf71A6NGG8 1288 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 HIDE1A8MVS5 230 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 ANKRD63C9JTQ0 380 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 EIF3DO15371 548 aaKnown RBP eCLIP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 XPOTO43592 962 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 PRPF6O94906 941 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 KIF4AO95239 1232 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CASP1P29466 404 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 GTF2F1P35269 517 aaKnown RBP eCLIP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 TNFSF9P41273 254 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 GLUD2P49448 558 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 KCNA1Q09470 495 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 ELAVL2Q12926 359 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 ADAM15Q13444 863 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CUL4BQ13620 913 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 NAB2Q15742 525 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 SLC10A6Q3KNW5 377 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 KIAA1841Q6NSI8 718 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CD302Q8IX05 232 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 GRAMD1CQ8IYS0 662 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 RABGGTAQ92696 567 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 HPS3Q969F9 1004 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CCDC47Q96A33 483 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 TSPAN18Q96SJ8 248 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 VN1R3Q9BXE9 311 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 EMILIN2Q9BXX0 1053 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 FGFBP2Q9BYJ0 223 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 EXOC1Q9NV70 894 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CACNG4Q9UBN1 327 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 CPSF3Q9UKF6 684 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 AGO2Q9UKV8 859 aaKnown RBP12.47□□□□□ -0.41
COL28A1-203ENST00000435823 IRAK3Q9Y616 596 aa12.47□□□□□ -0.41
COL28A1-203ENST00000435823 UBE4BO95155 1302 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 SPDYE4A6NLX3 237 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 TISP43B9A030 160 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 F8W810 466 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 H3BQ06 376 aaPredicted RBP12.46□□□□□ -0.41
COL28A1-203ENST00000435823 TMEM189-UBE2V1I3L0A0 370 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 C2CD2LO14523 706 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 LINC01565O15544 149 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 FAM189A1O60320 539 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 B3GAT3O94766 335 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 ZNF202O95125 648 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 GARTP22102 1010 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 CLCNKBP51801 687 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 PTPN14Q15678 1187 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 CTC1Q2NKJ3 1217 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 USP41Q3LFD5 358 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 PUS10Q3MIT2 529 aaKnown RBP12.46□□□□□ -0.41
COL28A1-203ENST00000435823 LEXMQ3ZCV2 418 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 ZBTB41Q5SVQ8 909 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 KANK3Q6NY19 840 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 DCLRE1AQ6PJP8 1040 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 KRBA2Q6ZNG9 492 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 RNF168Q8IYW5 571 aaPredicted RBP12.46□□□□□ -0.41
COL28A1-203ENST00000435823 HASPINQ8TF76 798 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 AUTS2Q8WXX7 1259 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 FAM212AQ96EL1 285 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 ZMAT2Q96NC0 199 aaKnown RBP12.46□□□□□ -0.41
COL28A1-203ENST00000435823 PAAF1Q9BRP4 392 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 GPR62Q9BZJ7 368 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 GOLPH3LQ9H4A5 285 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 GOLGA2P5Q9HBQ8 144 aa12.46□□□□□ -0.41
COL28A1-203ENST00000435823 UBQLN1Q9UMX0 589 aaKnown RBP12.46□□□□□ -0.41
COL28A1-203ENST00000435823 TTC26A0AVF1 554 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 LACTBL1A8MY62 500 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 PODXLO00592 558 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 KIAA0391O15091 583 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 TRAPPC3O43617 180 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 CLASP2O75122 1294 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 EFEMP2O95967 443 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 LDHAP00338 332 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ADSSP30520 456 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 RPL9P32969 192 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ACOT2P49753 483 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 POU5F1Q01860 360 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 CREMQ03060 361 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 SOX4Q06945 474 aaPredicted RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 EHHADHQ08426 723 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 PSMD2Q13200 908 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ENOX2Q16206 610 aaKnown RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 UPP1Q16831 310 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 LLGL2Q6P1M3 1020 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ARMCX5Q6P1M9 558 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 EPM2AIP1Q7L775 607 aaPredicted RBP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 TAS1R1Q7RTX1 841 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 PPFIBP1Q86W92 1011 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 GLIS3Q8NEA6 775 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ZNF507Q8TCN5 953 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 CASP10Q92851 521 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 IKZF4Q9H2S9 585 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 ASB7Q9H672 318 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 SLC39A2Q9NP94 309 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.45□□□□□ -0.42
COL28A1-203ENST00000435823 FAM50BQ9Y247 325 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 NUB1Q9Y5A7 615 aa12.45□□□□□ -0.42
COL28A1-203ENST00000435823 REV3LO60673 3130 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms