RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 GH1P01241 217 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 TRIM49P0CI25 452 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 TRIM49CP0CI26 452 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 TMEM259Q4ZIN3 620 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 IER5Q5VY09 327 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 EFL1Q7Z2Z2 1120 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 STAMBPL1Q96FJ0 436 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 SIK2Q9H0K1 926 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 MED14O60244 1454 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 CDH16O75309 829 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 ZNF746Q6NUN9 644 aaPredicted RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 SHC4Q6S5L8 630 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 HHIPL2Q6UWX4 724 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 DDIASQ8IXT1 998 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 FAM161BQ96MY7 647 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 FBXO2Q9UK22 296 aaPredicted RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 STK25O00506 426 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 PHF2O75151 1096 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 RHOBTB3O94955 611 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 APOA4P06727 396 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 MAP4P27816 1152 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 SPATA4Q8NEY3 305 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 GFM2Q969S9 779 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 NSUN4Q96CB9 384 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 CPVLQ9H3G5 476 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 RUBCNLQ9H714 662 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 PIN4Q9Y237 131 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 SULT1E1P49888 294 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 TMEM132DQ14C87 1099 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 SF3B3Q15393 1217 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 WDR72Q3MJ13 1102 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 DNAL1Q4LDG9 190 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 DCP1BQ8IZD4 617 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 ZNF526Q8TF50 670 aaPredicted RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 ARHGEF26Q96DR7 871 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 SGSM3Q96HU1 749 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 PAWRQ96IZ0 340 aaKnown RBP13.47□□□□□ -0.25
LDB3-205ENST00000429277 GJB4Q9NTQ9 266 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 SNX12Q9UMY4 172 aa13.47□□□□□ -0.25
LDB3-205ENST00000429277 KDM1AO60341 852 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 HMOX2P30519 316 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 FOXO4P98177 505 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 NCAPHQ15003 741 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 PARK7Q99497 189 aaKnown RBP13.46□□□□□ -0.25
LDB3-205ENST00000429277 RIT2Q99578 217 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 PHF20Q9BVI0 1012 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 ETNK1Q9HBU6 452 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 NRKQ7Z2Y5 1582 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 DFFAO00273 331 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 ANGPT2O15123 496 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 PCSK1P29120 753 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 CASP1P29466 404 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 TMED1Q13445 227 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 DCAF4L1Q3SXM0 396 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 DCTN4Q9UJW0 460 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 FBXL5Q9UKA1 691 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 CSPG5O95196 566 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 SRGNP10124 158 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 KITP10721 976 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 GFAPP14136 432 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 KCNA4P22459 653 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 EXOSC10Q01780 885 aaKnown RBP13.46□□□□□ -0.25
LDB3-205ENST00000429277 HIC1Q14526 733 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 STKLD1Q8NE28 680 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 ABTB1Q969K4 478 aaPredicted RBP13.46□□□□□ -0.25
LDB3-205ENST00000429277 NR1H4Q96RI1 486 aaPredicted RBP13.46□□□□□ -0.25
LDB3-205ENST00000429277 MAD2L2Q9UI95 211 aa13.46□□□□□ -0.25
LDB3-205ENST00000429277 ZC3H4Q9UPT8 1303 aaKnown RBP13.46□□□□□ -0.25
LDB3-205ENST00000429277 GAS2O43903 313 aaKnown RBP13.46□□□□□ -0.26
LDB3-205ENST00000429277 GRIK1P39086 918 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 SERPINB10P48595 397 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 CCDC15Q0P6D6 951 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 DHX40Q8IX18 779 aaKnown RBP13.46□□□□□ -0.26
LDB3-205ENST00000429277 ADSSL1Q8N142 457 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 CMTM5Q96DZ9 223 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 AGAP1Q9UPQ3 857 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 PITPNM2Q9BZ72 1349 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 A0A1B0GTH6 734 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 SV2CQ496J9 727 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 ANKRD40Q6AI12 368 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 RIBC1Q8N443 379 aaPredicted RBP13.46□□□□□ -0.26
LDB3-205ENST00000429277 ATPAF2Q8N5M1 289 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 SLC13A1Q9BZW2 595 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 PAK5Q9P286 719 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 ARL2BPQ9Y2Y0 163 aa13.46□□□□□ -0.26
LDB3-205ENST00000429277 TULP4Q9NRJ4 1543 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 FAM196BA6NMK8 535 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 CYP26A1O43174 497 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 ARHGEF9O43307 516 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 GRIN1Q05586 938 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 PRMT7Q9NVM4 692 aaPredicted RBP13.45□□□□□ -0.26
LDB3-205ENST00000429277 OCM2P0CE71 109 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 OCMP0CE72 109 aaPredicted RBP13.45□□□□□ -0.26
LDB3-205ENST00000429277 LCP1P13796 627 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 FMO5P49326 533 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 C16orf87Q6PH81 154 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 TRABDQ9H4I3 376 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 CATSPERBQ9H7T0 1116 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 SELENONQ9NZV5 590 aa13.45□□□□□ -0.26
LDB3-205ENST00000429277 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms