RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SV2AQ7L0J3 742 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 SLFN11Q7Z7L1 901 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 CCDC17Q96LX7 622 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 ZNF317Q96PQ6 595 aaPredicted RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 TRIM56Q9BRZ2 755 aaKnown RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 KMT5AQ9NQR1 393 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 NXF1Q9UBU9 619 aaKnown RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 TJP2Q9UDY2 1190 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 NR2E3Q9Y5X4 410 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 ASTN2O75129 1339 aaPredicted RBP9.21□□□□□ -0.94
USP40-203ENST00000427112 ADAMTSL1Q8N6G6 1762 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 TNRC6CQ9HCJ0 1690 aaKnown RBP9.21□□□□□ -0.94
USP40-203ENST00000427112 LRRD1A4D1F6 860 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 SGK1O00141 431 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 PLS3P13797 630 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 CD19P15391 556 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 NUMBP49757 651 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 AP3B2Q13367 1082 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 COBLL1Q53SF7 1204 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 C1orf220Q5T0J3 134 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 AGBL2Q5U5Z8 902 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 WDR78Q5VTH9 848 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 RASGEF1CQ8N431 466 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 EMC1Q8N766 993 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 TTC8Q8TAM2 541 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 CNKSR1Q969H4 720 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 BORCS6Q96GS4 357 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 NT5C1BQ96P26 610 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 FNBP1Q96RU3 617 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 MKNK1Q9BUB5 465 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 AAASQ9NRG9 546 aa9.21□□□□□ -0.94
USP40-203ENST00000427112 A0A1B0GUA9 196 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 ZBED4O75132 1171 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 APBA3O96018 575 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 EGFRP00533 1210 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 KRT19P08727 400 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SSTR1P30872 391 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 MARSP56192 900 aaKnown RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 HYIQ5T013 277 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 INTS8Q75QN2 995 aaKnown RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 LONP2Q86WA8 852 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 DCAF4Q8WV16 495 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SPDL1Q96EA4 605 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 RBM15Q96T37 977 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP40-203ENST00000427112 NAP1L3Q99457 506 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 ACSS2Q9NR19 701 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP40-203ENST00000427112 NKX1-2Q9UD57 310 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 hCG_1984214I3L0E3 225 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 ENTPD5O75356 428 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 GAP43P17677 238 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 PIK3CAP42336 1068 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 NSFP46459 744 aaKnown RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 RARRES1P49788 294 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 NCALDP61601 193 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 DRP2Q13474 957 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 CDO1Q16878 200 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 BBS9Q3SYG4 887 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 C6orf118Q5T5N4 469 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 RC3H1Q5TC82 1133 aaKnown RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 BSPRYQ5W0U4 402 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 VSTM1Q6UX27 236 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 STXBP4Q6ZWJ1 553 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SPATA21Q7Z572 469 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SP8Q8IXZ3 490 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 ZNF713Q8N859 430 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 HIPK4Q8NE63 616 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 ACCSQ96QU6 501 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 NINJ2Q9NZG7 142 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 DNPEPQ9ULA0 475 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 GINS2Q9Y248 185 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 PHLPP1O60346 1717 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 F8VP50 259 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 RTN2O75298 545 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 GJB1P08034 283 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 EPHB2P29323 1055 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 CHRNA3P32297 505 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 RPS6P62753 249 aaKnown RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 ALCAMQ13740 583 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 DLGAP5Q15398 846 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 LRRC36Q1X8D7 754 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 LARGE2Q8N3Y3 721 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 LMO3Q8TAP4 145 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 TLCD1Q96CP7 247 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 FAM163AQ96GL9 167 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 PRR11Q96HE9 360 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 RMDN3Q96TC7 470 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 NYAP2Q9P242 653 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 USP15Q9Y4E8 981 aaPredicted RBP9.2□□□□□ -0.94
USP40-203ENST00000427112 RIPK3Q9Y572 518 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SYNGAP1Q96PV0 1343 aa9.2□□□□□ -0.94
USP40-203ENST00000427112 SNX3O60493 162 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 FOSP01100 380 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 MSH2P43246 934 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 MMP13P45452 471 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 NPTX2P47972 431 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 PEX5P50542 639 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 MGAT5Q09328 741 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 Q4G0T1 1027 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 DCUN1D2Q6PH85 259 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms