RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 CITO14578 2027 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 PDGFBP01127 241 aaPredicted RBP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 HNRNPA1P09651 372 aaKnown RBP eCLIP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 MAPTP10636 758 aaKnown RBP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 LONP1P36776 959 aaKnown RBP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 NUBP1P53384 320 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 VCPP55072 806 aaKnown RBP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 RAB33AQ14088 237 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 LIN9Q5TKA1 542 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 CD300LGQ6UXG3 332 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 ZPBP2Q6X784 338 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 ZBTB45Q96K62 511 aaPredicted RBP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 SMOC2Q9H3U7 446 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 GOLGA2P5Q9HBQ8 144 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 EPS15L1Q9UBC2 864 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 ODF2LQ9ULJ1 636 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 VWA8A3KMH1 1905 aa19.25■□□□□ 0.67
PDLIM2-208ENST00000416159 N4BP1O75113 896 aaKnown RBP19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 HARSP12081 509 aaKnown RBP19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 PDCP20941 246 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 NOLC1Q14978 699 aaKnown RBP eCLIP19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 SF3A1Q15459 793 aaKnown RBP19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 ARSHQ5FYA8 562 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 ANKS3Q6ZW76 656 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 ALYREFQ86V81 257 aaKnown RBP19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 KCNN1Q92952 543 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 NXPE3Q969Y0 559 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 MYADMQ96S97 322 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 CNTN3Q9P232 1028 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 MTRRQ9UBK8 725 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 DUSP12Q9UNI6 340 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 BACE2Q9Y5Z0 518 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 KMT2EQ8IZD2 1858 aa19.24■□□□□ 0.67
PDLIM2-208ENST00000416159 DOCK8Q8NF50 2099 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 NPHP3-ACAD11A0A0J9YXS1 232 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 CLDN3O15551 220 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 SCP2P22307 547 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 IGFBP6P24592 240 aaPredicted RBP19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 TKTP29401 623 aaKnown RBP19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 HOXA9P31269 272 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 RPL9P32969 192 aaKnown RBP19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 OR1D2P34982 312 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 BRCC3P46736 316 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 NCKAP1LP55160 1127 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 SOX4Q06945 474 aaPredicted RBP19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 UVSSAQ2YD98 709 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 PPM1LQ5SGD2 360 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 RTL10Q7L3V2 364 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 GPBP1Q86WP2 473 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 C3orf58Q8NDZ4 430 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 ZMAT2Q96NC0 199 aaKnown RBP19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 IRF2BPLQ9H1B7 796 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 MFSD1Q9H3U5 465 aa19.23■□□□□ 0.67
PDLIM2-208ENST00000416159 VPS37CA5D8V6 355 aaPredicted RBP19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 PODXLO00592 558 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 ADAM12O43184 909 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 XYLBO75191 536 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 C8AP07357 584 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 CACNB1Q02641 598 aaPredicted RBP19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 MCL1Q07820 350 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 HAUS6Q7Z4H7 955 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 RASSF8Q8NHQ8 419 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 BLOC1S4Q9NUP1 217 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 ANKFY1Q9P2R3 1169 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 ZFP37Q9Y6Q3 630 aaPredicted RBP19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 PIEZO1Q92508 2521 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 DOCK6Q96HP0 2047 aa19.22■□□□□ 0.67
PDLIM2-208ENST00000416159 I3L4J1 428 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 FAM13AO94988 1023 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 POU2F2P09086 479 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 LAMP2P13473 410 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 FSHRP23945 695 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 MATR3P43243 847 aaKnown RBP eCLIP19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 TCF15Q12870 199 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 DHX8Q14562 1220 aaKnown RBP19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 SLC10A6Q3KNW5 377 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 AXDND1Q5T1B0 1012 aaPredicted RBP19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 ASTLQ6HA08 431 aaPredicted RBP19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 GET4Q7L5D6 327 aaPredicted RBP19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 MYCT1Q8N699 235 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 RAD54LQ92698 747 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 BICD1Q96G01 975 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 REEP2Q9BRK0 252 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 PLEKHA5Q9HAU0 1116 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 NUB1Q9Y5A7 615 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 CDY1Q9Y6F8 540 aa19.21■□□□□ 0.67
PDLIM2-208ENST00000416159 SYN3O14994 580 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 KRT18P05783 430 aaKnown RBP19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 CLTAP09496 248 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 PLCG1P19174 1290 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 MRE11P49959 708 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 CLCN5P51795 746 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 GRIN1Q05586 938 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 MCM6Q14566 821 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 KARSQ15046 597 aaKnown RBP19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 KYAT1Q16773 422 aa19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 RSPO2Q6UXX9 243 aaPredicted RBP19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 GRASPQ7Z6J2 395 aaPredicted RBP19.2■□□□□ 0.66
PDLIM2-208ENST00000416159 SLC44A3Q8N4M1 653 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms