RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PSTPIP1O43586 416 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 HOXD10P28358 340 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 RBP5P82980 135 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 NAB1Q13506 487 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PKN2Q16513 984 aaKnown RBP6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF568Q3ZCX4 644 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 CIAPIN1Q6FI81 312 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 NAPEPLDQ6IQ20 393 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PRMT9Q6P2P2 845 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 C1orf228Q6PIY5 440 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 TAGAPQ8N103 731 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 HSPH1Q92598 858 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 NSL1Q96IY1 281 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ERGIC2Q96RQ1 377 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 KATNAL1Q9BW62 490 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF518BQ9C0D4 1074 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PCIF1Q9H4Z3 704 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 APEX2Q9UBZ4 518 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 SOX13Q9UN79 622 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 OVOS2A0A0G2JMS6 1433 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 OVOS2A0A0J9YW53 1432 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 NPHP4O75161 1426 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-203ENST00000409050 OVOS2Q6IE36 1432 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 TET3O43151 1660 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 USP31Q70CQ4 1352 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 MROH7-TTC4A0A0A0MT08 1334 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 CCT8L1PA6NM43 557 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 RPS6KA4O75676 772 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 SLC2A3P11169 496 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 HMOX2P30519 316 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 RGS2P41220 211 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF200P98182 395 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-203ENST00000409050 KRT17Q04695 432 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 MCL1Q07820 350 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PKP1Q13835 747 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 GTF2H3Q13889 308 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 RHPN2Q8IUC4 686 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ZBED8Q8IZ13 594 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ADSSL1Q8N142 457 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 EDC3Q96F86 508 aaKnown RBP6.41□□□□□ -1.38
SCN1A-203ENST00000409050 SPATA16Q9BXB7 569 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 CATSPERBQ9H7T0 1116 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PBRM1Q86U86 1689 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 C5orf58C9J3I9 102 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ADORA1P30542 326 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 TTKP33981 857 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 MYL6P60660 151 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 KYNUQ16719 465 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 XKR3Q5GH77 459 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF772Q68DY9 489 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-203ENST00000409050 DAGLBQ8NCG7 672 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 TTLL11Q8NHH1 800 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 CCT8L2Q96SF2 557 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 MAD2L2Q9UI95 211 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 PCDHA10Q9Y5I2 948 aa6.41□□□□□ -1.38
SCN1A-203ENST00000409050 TTC26A0AVF1 554 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CLASP2O75122 1294 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 HNRNPCP07910 306 aaKnown RBP eCLIP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 KCNA2P16389 499 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 PCSK2P16519 638 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CXCR5P32302 372 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 NCKAP1LP55160 1127 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF235Q14590 738 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 C16orf72Q14CZ0 275 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 MAPRE1Q15691 268 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 BOLA3Q53S33 107 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 TMEM270Q6UE05 265 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 LCA5Q86VQ0 697 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CDR2LQ86X02 465 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 DDX42Q86XP3 938 aaKnown RBP eCLIP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 RBM46Q8TBY0 533 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 C18orf8Q96DM3 657 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CYFIP2Q96F07 1278 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 DCUN1D1Q96GG9 259 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 DYDC2Q96IM9 177 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 RIT2Q99578 217 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CEP44Q9C0F1 390 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 PUS7LQ9H0K6 701 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 LY9Q9HBG7 655 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ANKEF1Q9NU02 776 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 TLR7Q9NYK1 1049 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 PCDHB2Q9Y5E7 798 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 RAD54BQ9Y620 910 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ZBBXA8MT70 800 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 EVPLLA8MZ36 301 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 M0QYV0 167 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 GLRA3O75311 464 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 CYBBP04839 570 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 THRAP10827 490 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 GRK2P25098 689 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 RAB14P61106 215 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 EFHC1Q5JVL4 640 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 PASD1Q8IV76 773 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 DHX40Q8IX18 779 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 VPS50Q96JG6 964 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 TMEM47Q9BQJ4 181 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ACAD9Q9H845 621 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 OLA1Q9NTK5 396 aaKnown RBP6.4□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF229Q9UJW7 825 aa6.4□□□□□ -1.38
SCN1A-203ENST00000409050 MBD5Q9P267 1494 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms