RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 KLC2Q9H0B6 622 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 ATP6V0A4Q9HBG4 840 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 NPHS2Q9NP85 383 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 TBC1D22BQ9NU19 505 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 KBTBD4Q9NVX7 518 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 RBAKQ9NYW8 714 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 LCMT1Q9UIC8 334 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 APOBEC2Q9Y235 224 aaKnown RBP11.4□□□□□ -0.58
CCDC40-204ENST00000397545 CDH16O75309 829 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 NPEPPSP55786 919 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 CAV1Q03135 178 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 P3H1Q32P28 736 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 EDRF1Q3B7T1 1238 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 HSP90AA5PQ58FG0 334 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 CATSPER3Q86XQ3 398 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 NUDCD3Q8IVD9 361 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 THAP2Q9H0W7 228 aa11.4□□□□□ -0.58
CCDC40-204ENST00000397545 A0A1W2PQJ5 194 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 CFAP73A6NFT4 308 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 PHF2O75151 1096 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 TFDP2Q14188 446 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 ZNF568Q3ZCX4 644 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 COL23A1Q86Y22 540 aaPredicted RBP11.4□□□□□ -0.59
CCDC40-204ENST00000397545 TNFRSF25Q93038 417 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 MASTLQ96GX5 879 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 MRPL46Q9H2W6 279 aaKnown RBP11.4□□□□□ -0.59
CCDC40-204ENST00000397545 EPS15L1Q9UBC2 864 aa11.4□□□□□ -0.59
CCDC40-204ENST00000397545 ECE2O60344 883 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 CYP11B2P19099 503 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 BCAR1P56945 870 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 RABGAP1LQ5R372 815 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 PLA2G4FQ68DD2 849 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 DPP9Q86TI2 863 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 LRRC34Q8IZ02 419 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 CCNYL1Q8N7R7 359 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 FBXO25Q8TCJ0 367 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 OSGEPQ9NPF4 335 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 AGO2Q9UKV8 859 aaKnown RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ZHX2Q9Y6X8 837 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 MYH13Q9UKX3 1938 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ESYT2A0FGR8 921 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 CNGA1P29973 690 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 JAK3P52333 1124 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 CDH6P55285 790 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 STX1BP61266 288 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 PSMC5P62195 406 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 OCRLQ01968 901 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 FOXD4Q12950 439 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 NR1H3Q13133 447 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 HIF1AQ16665 826 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 RGS9BPQ6ZS82 235 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 TRMT10CQ7L0Y3 403 aaKnown RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ELOA2Q8IYF1 753 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ATP11CQ8NB49 1132 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 TPCN2Q8NHX9 752 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ATG4AQ8WYN0 398 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ZBTB12Q9Y330 459 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 CCT8L1PA6NM43 557 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 FOXN3O00409 490 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ATP5HO75947 161 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 LDHAP00338 332 aaKnown RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 EEF1B2P24534 225 aaKnown RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ELF1P32519 619 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 KRT76Q01546 638 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 DNAJC3Q13217 504 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 FAM102AQ5T9C2 384 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 HACE1Q8IYU2 909 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 SLC26A7Q8TE54 656 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 SKA2Q8WVK7 121 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 TTC25Q96NG3 672 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 RPS6KC1Q96S38 1066 aa11.39□□□□□ -0.59
CCDC40-204ENST00000397545 POLR3FQ9H1D9 316 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 KLHL8Q9P2G9 620 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-204ENST00000397545 ITGA4P13612 1032 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 YWHABP31946 246 aaKnown RBP11.38□□□□□ -0.59
CCDC40-204ENST00000397545 DDR1Q08345 913 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 PRPSAP1Q14558 356 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 TTC13Q8NBP0 860 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 CEP70Q8NHQ1 597 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 CXorf38Q8TB03 319 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 ATP6V1E2Q96A05 226 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 ACSF2Q96CM8 615 aaPredicted RBP11.38□□□□□ -0.59
CCDC40-204ENST00000397545 TRIM56Q9BRZ2 755 aaKnown RBP11.38□□□□□ -0.59
CCDC40-204ENST00000397545 DUOX1Q9NRD9 1551 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 TTC4O95801 387 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 CALB1P05937 261 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 THOC5Q13769 683 aaKnown RBP11.38□□□□□ -0.59
CCDC40-204ENST00000397545 KLHL38Q2WGJ6 581 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 PPP1R2P3Q6NXS1 205 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 LRIG3Q6UXM1 1119 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 SIX6OS1Q8N1H7 587 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 TRIML2Q8N7C3 387 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 PRPF38AQ8NAV1 312 aaKnown RBP11.38□□□□□ -0.59
CCDC40-204ENST00000397545 RAPGEF5Q92565 580 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 PPP1R36Q96LQ0 422 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 KIFC3Q9BVG8 833 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 UBN1Q9NPG3 1134 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 CHD4Q14839 1912 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 M0QYV0 167 aa11.38□□□□□ -0.59
CCDC40-204ENST00000397545 NFX1Q12986 1120 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms