RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 EDNRBP24530 442 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 HOXD10P28358 340 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 FMO1Q01740 532 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 PTPROQ16827 1216 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 C15orf39Q6ZRI6 1047 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 FAM76AQ8TAV0 307 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 SLC7A3Q8WY07 619 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 USP6NLQ92738 828 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 PCDHB18PQ96TA0 734 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 POP1Q99575 1024 aaKnown RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 FAM213AQ9BRX8 229 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 TELO2Q9Y4R8 837 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 ALG6Q9Y672 507 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 GOLGA6CA6NDK9 693 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 LDHAP00338 332 aaKnown RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 FGGP02679 453 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 GOLGA6DP0CG33 693 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 DLATP10515 647 aaKnown RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 CAPN2P17655 700 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 ATP4AP20648 1035 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 ARL2P36404 184 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 MAP2K5Q13163 448 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 LEKR1Q6ZMV7 388 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 DPP9Q86TI2 863 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 SLC47A2Q86VL8 602 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 SOCS4Q8WXH5 440 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 RIN2Q8WYP3 895 aaPredicted RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 RNPC3Q96LT9 517 aaKnown RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 TOPORSQ9NS56 1045 aaPredicted RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 GOLGA6AQ9NYA3 693 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 UVRAGQ9P2Y5 699 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 GTF3C4Q9UKN8 822 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 RPS6KA5O75582 802 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 CYP1A2P05177 515 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 TGFB3P10600 412 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 CYP2B6P20813 491 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 ACTN2P35609 894 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 HSPA9P38646 679 aaKnown RBP23.11■■□□□ 1.29
TRIM54-202ENST00000380075 CNTN2Q02246 1040 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 NEDD9Q14511 834 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 CFAP58Q5T655 872 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 CD302Q8IX05 232 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 DEPTORQ8TB45 409 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 PSPC1Q8WXF1 523 aaKnown RBP23.11■■□□□ 1.29
TRIM54-202ENST00000380075 SEC14L1Q92503 715 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 DHX38Q92620 1227 aaKnown RBP23.11■■□□□ 1.29
TRIM54-202ENST00000380075 DDX47Q9H0S4 455 aaKnown RBP23.11■■□□□ 1.29
TRIM54-202ENST00000380075 C1orf112Q9NSG2 853 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 NRBP2Q9NSY0 501 aa23.11■■□□□ 1.29
TRIM54-202ENST00000380075 DNAJC25-GNG10A0A024R161 153 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 PTENP60484 403 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 DCAF12L1Q5VU92 463 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 FAM160B1Q5W0V3 765 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 IQCKQ8N0W5 287 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 FNBP1Q96RU3 617 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 WNT8AQ9H1J5 351 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 TMEM134Q9H6X4 195 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 DOCK3Q8IZD9 2030 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 MGAMO43451 1857 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 GGPS1O95749 300 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 FAM153BP0C7A2 387 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 FAM153CQ494X1 144 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 SEPT14Q6ZU15 432 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 ZNF677Q86XU0 584 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 LRRC45Q96CN5 670 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 MPHOSPH6Q99547 160 aaKnown RBP23.1■■□□□ 1.29
TRIM54-202ENST00000380075 FAM153AQ9UHL3 310 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 AGO2Q9UKV8 859 aaKnown RBP23.1■■□□□ 1.29
TRIM54-202ENST00000380075 DOCK5Q9H7D0 1870 aa23.1■■□□□ 1.29
TRIM54-202ENST00000380075 MMEP08473 750 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 UBA1P22314 1058 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 GLRA2P23416 452 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 RGS2P41220 211 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 BPIFB4P59827 614 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 HLTFQ14527 1009 aaKnown RBP eCLIP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 WDR44Q5JSH3 913 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 C1orf131Q8NDD1 294 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 NPLOC4Q8TAT6 608 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 DDX1Q92499 740 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 PKNOX2Q96KN3 472 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ZIM3Q96PE6 472 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 CEP89Q96ST8 783 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ZSWIM1Q9BR11 485 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 RAB17Q9H0T7 212 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 FAM114A2Q9NRY5 505 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 UTP11Q9Y3A2 253 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 K7ERI5 159 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 FARP2O94887 1054 aaPredicted RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ITGA4P13612 1032 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 POU5F1Q01860 360 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ZNF792Q3KQV3 632 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ZACNQ401N2 412 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 CTU1Q7Z7A3 348 aaKnown RBP23.09■■□□□ 1.29
TRIM54-202ENST00000380075 ASAP3Q8TDY4 903 aa23.09■■□□□ 1.29
TRIM54-202ENST00000380075 MYH9P35579 1960 aaKnown RBP23.08■■□□□ 1.29
TRIM54-202ENST00000380075 TARBP2Q15633 366 aaKnown RBP23.08■■□□□ 1.29
TRIM54-202ENST00000380075 ACAD10Q6JQN1 1059 aa23.08■■□□□ 1.29
TRIM54-202ENST00000380075 ZNF564Q8TBZ8 553 aaPredicted RBP23.08■■□□□ 1.29
TRIM54-202ENST00000380075 TMEM143Q96AN5 459 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms