RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 UBA1P22314 1058 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 RRM1P23921 792 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 HPDP32754 393 aaPredicted RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 MYH9P35579 1960 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 LIG4P49917 911 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 PLTPP55058 493 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 VGLL4Q14135 290 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 SLC13A5Q86YT5 568 aaPredicted RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 APOBEC3FQ8IUX4 373 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 UBL4BQ8N7F7 174 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 RNF25Q96BH1 459 aaPredicted RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 FAM114A2Q9NRY5 505 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 LOC102724159A0A0B4J2E5 919 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 ZEB2O60315 1214 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 LSP1P33241 339 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 SEC24CP53992 1094 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 PWP2Q15269 919 aaKnown RBP14.33□□□□□ -0.12
CCDC3-202ENST00000378839 NOL9Q5SY16 702 aaKnown RBP14.33□□□□□ -0.12
CCDC3-202ENST00000378839 MAGOHBQ96A72 148 aaKnown RBP14.33□□□□□ -0.12
CCDC3-202ENST00000378839 LRRC45Q96CN5 670 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 WNT8AQ9H1J5 351 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 HOXC10Q9NYD6 342 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 FBXO40Q9UH90 709 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 PCYOX1Q9UHG3 505 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 AGO2Q9UKV8 859 aaKnown RBP14.33□□□□□ -0.12
CCDC3-202ENST00000378839 ADGRA2Q96PE1 1338 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 CNTNAP2Q9UHC6 1331 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 ICAM3P32942 547 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 ANKS1BQ7Z6G8 1248 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 MCOLN2Q8IZK6 566 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 CYFIP2Q96F07 1278 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 IFT74Q96LB3 600 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 FMO2Q99518 471 aa14.33□□□□□ -0.12
CCDC3-202ENST00000378839 CLDN3O15551 220 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 SPOPO43791 374 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 FARP2O94887 1054 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 GJB6O95452 261 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 ALDH5A1P51649 535 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 STXBP2Q15833 593 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 SH3D19Q5HYK7 790 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TMEM63BQ5T3F8 832 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 CCDC137Q6PK04 289 aaKnown RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 PASD1Q8IV76 773 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 PTPN22Q9Y2R2 807 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 LRRIQ4A6NIV6 560 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 HMGB1P1B2RPK0 211 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TNNI1P19237 187 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 IBSPP21815 317 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TMOD1P28289 359 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TNFSF9P41273 254 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 GTF2A1P52655 376 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TARBP2Q15633 366 aaKnown RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 CYP1B1Q16678 543 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 GNPTABQ3T906 1256 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 EEPD1Q7L9B9 569 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 TMEM130Q8N3G9 435 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 CDHR1Q96JP9 859 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 ANKFY1Q9P2R3 1169 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 SLC12A6Q9UHW9 1150 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 NUB1Q9Y5A7 615 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 PAPPA2Q9BXP8 1791 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 PTPRFP10586 1907 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 CYP1A1P04798 512 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 MYZAPP0CAP1 466 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 CAPSQ13938 189 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 DHX34Q14147 1143 aaKnown RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 LBX2Q6XYB7 198 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 ANKRD35Q8N283 1001 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 NAP1L3Q99457 506 aaPredicted RBP14.32□□□□□ -0.12
CCDC3-202ENST00000378839 SPON1Q9HCB6 807 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 UVRAGQ9P2Y5 699 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 ANAPC7Q9UJX3 599 aa14.32□□□□□ -0.12
CCDC3-202ENST00000378839 A0A0B4J269 797 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 GOLGA6L10A0A0M3HER8 536 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 FAM187AA6NFU0 413 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 FAM189A1O60320 539 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 STAM2O75886 525 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 COILP38432 576 aaPredicted RBP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 MDH1P40925 334 aaKnown RBP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 LY6KQ17RY6 165 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 C1orf54Q8WWF1 131 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 ZBTB10Q96DT7 871 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 NIFKQ9BYG3 293 aaKnown RBP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 RAB17Q9H0T7 212 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 CD2APQ9Y5K6 639 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 ARIH2O95376 493 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 SCP2P22307 547 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 CHRNA3P32297 505 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 MON1BQ7L1V2 547 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 ATG4AQ8WYN0 398 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 SEMA4AQ9H3S1 761 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 C1orf112Q9NSG2 853 aa14.31□□□□□ -0.12
CCDC3-202ENST00000378839 RBAKQ9NYW8 714 aaPredicted RBP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 BCCIPQ9P287 314 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 NOVA2Q9UNW9 492 aaKnown RBP14.31□□□□□ -0.12
CCDC3-202ENST00000378839 SOCS7O14512 581 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 CST3P01034 146 aaPredicted RBP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 PIGRP01833 764 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 PIK3CAP42336 1068 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 PTGISQ16647 500 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms