RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 POLR2FP61218 127 aaKnown RBP15.41■□□□□ 0.06
HMGA1-203ENST00000374116 KCNA1Q09470 495 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 CASP8Q14790 479 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 DPY19L2P1Q6NXN4 242 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 LRRC8DQ7L1W4 858 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 BORCS6Q96GS4 357 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 SCLT1Q96NL6 688 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 KIFC3Q9BVG8 833 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 NLRC4Q9NPP4 1024 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 A0A087WZ62 844 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 KIAA0355O15063 1070 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GPR32O75388 356 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 PPP1R37O75864 691 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 TIMP1P01033 207 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 IQCF3P0C7M6 154 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GLRA2P23416 452 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 MRPS6P82932 125 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 LAMTOR4Q0VGL1 99 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 BFSP2Q13515 415 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GPNMBQ14956 572 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 WDR93Q6P2C0 686 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 MYCT1Q8N699 235 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 NLRP7Q8WX94 980 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 PNKPQ96T60 521 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 FDXACB1Q9BRP7 624 aaPredicted RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 LUC7LQ9NQ29 371 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 PLCB1Q9NQ66 1216 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 AIPL1Q9NZN9 384 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 MYH11P35749 1972 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 NBNO60934 754 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 AKAP3O75969 853 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 AFPP02771 609 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 NR3C1P04150 777 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 ACRP10323 421 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GHRP10912 638 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 SELPP16109 830 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 PRLRP16471 622 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 NMT1P30419 496 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GPC3P51654 580 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 MGAT3Q09327 533 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 RSPH3Q86UC2 560 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 RNF149Q8NC42 400 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 CAGE1Q8TC20 777 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 PSPC1Q8WXF1 523 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 ALS2CR12Q96Q35 445 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 CRACR2AQ9BSW2 395 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 CELF4Q9BZC1 486 aaKnown RBP15.4■□□□□ 0.06
HMGA1-203ENST00000374116 GANQ9H2C0 597 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 ABCB6Q9NP58 842 aa15.4■□□□□ 0.06
HMGA1-203ENST00000374116 H0YGN5 161 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 RHOXF2BP0C7M4 288 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 EPB41P11171 864 aaKnown RBP15.39■□□□□ 0.05
HMGA1-203ENST00000374116 ARL2P36404 184 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 CAPSQ13938 189 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 TDRD12Q587J7 1177 aaKnown RBP15.39■□□□□ 0.05
HMGA1-203ENST00000374116 IER5Q5VY09 327 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 STXBP4Q6ZWJ1 553 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 RNF10Q8N5U6 811 aaKnown RBP15.39■□□□□ 0.05
HMGA1-203ENST00000374116 MCPH1Q8NEM0 835 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 RHOXF2Q9BQY4 288 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 JPH2Q9BR39 696 aaPredicted RBP15.39■□□□□ 0.05
HMGA1-203ENST00000374116 ADAMTS10Q9H324 1103 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 MINDY3Q9H8M7 445 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 DMAC2Q9NW81 257 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 USP20Q9Y2K6 914 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 LAMA3Q16787 3333 aa15.39■□□□□ 0.05
HMGA1-203ENST00000374116 LRRIQ4A6NIV6 560 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 PITPNM1O00562 1244 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 MAPTP10636 758 aaKnown RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 PEX3P56589 373 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 GFPT1Q06210 699 aaPredicted RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 TCTN1Q2MV58 587 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 ZC2HC1CQ53FD0 456 aaPredicted RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 IQCEQ6IPM2 695 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 NOA1Q8NC60 698 aaKnown RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 TMEM174Q8WUU8 243 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 TCP11Q8WWU5 503 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 VWCEQ96DN2 955 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 MMS19Q96T76 1030 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 AGO3Q9H9G7 860 aaKnown RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 IFT122Q9HBG6 1241 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 SNX12Q9UMY4 172 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 TRPV2Q9Y5S1 764 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 LTBP2Q14767 1821 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 TANC1Q9C0D5 1861 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 M0QZ92 97 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 SRGAP2O75044 1071 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 N4BP1O75113 896 aaKnown RBP15.38■□□□□ 0.05
HMGA1-203ENST00000374116 MCM3P25205 808 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 EPHB4P54760 987 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 RAPGEF1Q13905 1077 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 ASIC2Q16515 512 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 MFSD5Q6N075 450 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 FAM178BQ8IXR5 827 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 NME8Q8N427 588 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 FAM204AQ9H8W3 233 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 PPME1Q9Y570 386 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 NR2E3Q9Y5X4 410 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 CAPN6Q9Y6Q1 641 aa15.38■□□□□ 0.05
HMGA1-203ENST00000374116 ADGRA3Q8IWK6 1321 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms