RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 HSPBP1Q9NZL4 362 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 USP15Q9Y4E8 981 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 A0A1W2PQJ5 194 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 CTDNEP1O95476 244 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 YWHABP31946 246 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 OCA2Q04671 838 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 FRA10AC1Q70Z53 315 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 OSBPL1AQ9BXW6 950 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 HPCAL4Q9UM19 191 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 TAF6LQ9Y6J9 622 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 SLC9A1P19634 815 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 PGM1P36871 562 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 IRAK1P51617 712 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 HNRNPLLQ8WVV9 542 aaKnown RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 IFT43Q96FT9 208 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 MKNK1Q9BUB5 465 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 PSD3Q9NYI0 1048 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 KCND2Q9NZV8 630 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 FHOD1Q9Y613 1164 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ARHGAP10A1A4S6 786 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ZNF189O75820 626 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 LSP1P33241 339 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 XKR3Q5GH77 459 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 AGBL2Q5U5Z8 902 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 EP400NLQ6ZTU2 488 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 XPO6Q96QU8 1125 aaKnown RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 PPCSQ9HAB8 311 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 SNX5Q9Y5X3 404 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 NPHP3-ACAD11A0A0J9YXS1 232 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 NDUFB10O96000 172 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 IFNA8P32881 189 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 CARSP49589 748 aaKnown RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 AP1B1Q10567 949 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 LMBRD2Q68DH5 695 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 CAPRIN2Q6IMN6 1127 aaKnown RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 STYK1Q6J9G0 422 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 C1orf228Q6PIY5 440 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 MMGT1Q8N4V1 131 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ICA1LQ8NDH6 482 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ZNF668Q96K58 619 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-203ENST00000372407 IL25Q9H293 177 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 CHN1P15882 459 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ANGPTL8Q6UXH0 198 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ARHGAP18Q8N392 663 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 SLC30A5Q8TAD4 765 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 MAP3K14Q99558 947 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 ABCF3Q9NUQ8 709 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 LMCD1Q9NZU5 365 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 NYAP2Q9P242 653 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 PLAGL2Q9UPG8 496 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 DAGLAQ9Y4D2 1042 aa12.06□□□□□ -0.48
PTPRF-203ENST00000372407 PITPNM2Q9BZ72 1349 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 TMEM247A6NEH6 219 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PIK3R2O00459 728 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 TMEM253P0C7T8 217 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 KLRC1P26715 233 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 RECQLP46063 649 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 AARSP49588 968 aaKnown RBP eCLIP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 MTHFD1LQ6UB35 978 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 JAMLQ86YT9 394 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 RNF149Q8NC42 400 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 L2HGDHQ9H9P8 463 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 JPH1Q9HDC5 661 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 SYCE1LA8MT33 242 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 NSUN2Q08J23 767 aaKnown RBP eCLIP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 MAPRE2Q15555 327 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 FASTKD1Q53R41 847 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ZBTB41Q5SVQ8 909 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 KCTD17Q8N5Z5 321 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PDCD6IPQ8WUM4 868 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 CEP19Q96LK0 163 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PRMT1Q99873 361 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ERP44Q9BS26 406 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 RANBP17Q9H2T7 1088 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 EPB41L4AQ9HCS5 686 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 OLA1Q9NTK5 396 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PCDHB2Q9Y5E7 798 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ALG6Q9Y672 507 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PHF20L1A8MW92 1017 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 STXBP3O00186 592 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 PPP1R12AO14974 1030 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 RAD51CO43502 376 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 STAT5BP51692 787 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 RARS2Q5T160 578 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ANKMY2Q8IV38 441 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 TNIP3Q96KP6 325 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 OLFM3Q96PB7 478 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 OSBPL8Q9BZF1 889 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ROPN1BQ9BZX4 212 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ROPN1Q9HAT0 212 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 ALG13Q9NP73 1137 aaKnown RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 POLR1AO95602 1720 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-203ENST00000372407 FLT1P17948 1338 aa12.05□□□□□ -0.48
PTPRF-203ENST00000372407 FAM47DPA6NHR8 397 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 GOLGA8RI6L899 631 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 BCL9O00512 1426 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 APOL1O14791 398 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 APRTP07741 180 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 RPA1P27694 616 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms