RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MAN1C1Q9NR34 630 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 CNTN3Q9P232 1028 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 FNIP2Q9P278 1114 aa20.1■□□□□ 0.81
CLN3-202ENST00000355477 MYMKA6NI61 221 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 TBCAO75347 108 aaKnown RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 B3GAT3O94766 335 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 GLUD1P00367 558 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 ZSCAN22P10073 491 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 TXLNAP40222 546 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 MTHFRP42898 656 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 MATR3P43243 847 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-202ENST00000355477 PKP1Q13835 747 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 FOXD4L6Q3SYB3 417 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 ZC2HC1CQ53FD0 456 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 ATAT1Q5SQI0 421 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 FOXD4L3Q6VB84 417 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 LNX1Q8TBB1 728 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 DDX12PQ92771 950 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 C18orf25Q96B23 403 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 RIPOR3Q96MK2 946 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 UROC1Q96N76 676 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 ZNF396Q96N95 335 aaPredicted RBP20.09■□□□□ 0.81
CLN3-202ENST00000355477 NECTIN4Q96NY8 510 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 SFXN1Q9H9B4 322 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-202ENST00000355477 RAPGEFL1Q9UHV5 662 aa20.09■□□□□ 0.81
CLN3-202ENST00000355477 TMEM189-UBE2V1I3L0A0 370 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 I3L4J1 428 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 SPTLC2O15270 562 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 PIGRP01833 764 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 COL9A1P20849 921 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 LIG4P49917 911 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 GTF2BQ00403 316 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 ZBTB41Q5SVQ8 909 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 SLC39A4Q6P5W5 647 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 LILRA6Q6PI73 481 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 SV2BQ7L1I2 683 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 GPR149Q86SP6 731 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 PIK3R5Q8WYR1 880 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 DNAJC19Q96DA6 116 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 CLSTN3Q9BQT9 956 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 TSHZ2Q9NRE2 1034 aa20.08■□□□□ 0.81
CLN3-202ENST00000355477 SPDYE4A6NLX3 237 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 HNRNPDLO14979 420 aaKnown RBP20.07■□□□□ 0.8
CLN3-202ENST00000355477 TGM5O43548 720 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 FAM189A1O60320 539 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 F13A1P00488 732 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 CXCL8P10145 99 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 SCP2P22307 547 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 FGFR3P22607 806 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 TNFSF9P41273 254 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 STAT6P42226 847 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 BRCC3P46736 316 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 CCDC73Q6ZRK6 1079 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 SFR1Q86XK3 245 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 TMEM130Q8N3G9 435 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 PDILTQ8N807 584 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 IKZF4Q9H2S9 585 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 SLC38A7Q9NVC3 462 aa20.07■□□□□ 0.8
CLN3-202ENST00000355477 CCDC195A0A1B0GUA6 201 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 C2CD4DB7Z1M9 353 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 ANKRD63C9JTQ0 380 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 ADAM12O43184 909 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 PPP6R2O75170 966 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 RFPL2O75678 378 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 CLTAP09496 248 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 SPAG1Q07617 926 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 ELAVL2Q12926 359 aaKnown RBP20.06■□□□□ 0.8
CLN3-202ENST00000355477 PSMD5Q16401 504 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.06■□□□□ 0.8
CLN3-202ENST00000355477 ZNF720Q7Z2F6 126 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 DDX27Q96GQ7 796 aaKnown RBP20.06■□□□□ 0.8
CLN3-202ENST00000355477 NR2E1Q9Y466 385 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 DOCK8Q8NF50 2099 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 TCHHQ07283 1943 aa20.06■□□□□ 0.8
CLN3-202ENST00000355477 A0A0B4J269 797 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 TTC26A0AVF1 554 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 TISP43B9A030 160 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 PODXLO00592 558 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 YEATS4O95619 227 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 C1RP00736 705 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 PDIA4P13667 645 aaKnown RBP20.05■□□□□ 0.8
CLN3-202ENST00000355477 TKTP29401 623 aaKnown RBP20.05■□□□□ 0.8
CLN3-202ENST00000355477 CREMQ03060 361 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 C15orf39Q6ZRI6 1047 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 MAP4K3Q8IVH8 894 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 CMASQ8NFW8 434 aaPredicted RBP20.05■□□□□ 0.8
CLN3-202ENST00000355477 HDAC7Q8WUI4 952 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 ST6GALNAC4Q9H4F1 302 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 TBC1D7Q9P0N9 293 aa20.05■□□□□ 0.8
CLN3-202ENST00000355477 LACTBL1A8MY62 500 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 OGTO15294 1046 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 ENOX2Q16206 610 aaKnown RBP20.04■□□□□ 0.8
CLN3-202ENST00000355477 RSPO2Q6UXX9 243 aaPredicted RBP20.04■□□□□ 0.8
CLN3-202ENST00000355477 KREMEN2Q8NCW0 462 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 STAMQ92783 540 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 EDAQ92838 391 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 STRA6Q9BX79 667 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 PLEKHA4Q9H4M7 779 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 PLEKHA5Q9HAU0 1116 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms