RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SF3B3Q15393 1217 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 CNPY1Q3B7I2 92 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 WDR72Q3MJ13 1102 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SLC45A4Q5BKX6 768 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPDYAQ5MJ70 313 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31D4Q6ZUB0 917 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 ZNF804AQ7Z570 1209 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 CFAP61Q8NHU2 1237 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPIRE2Q8WWL2 714 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 NCSTNQ92542 709 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 PTCD3Q96EY7 689 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 PRR11Q96HE9 360 aaPredicted RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 NDNQ99608 321 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 DMAP1Q9NPF5 467 aaPredicted RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 UBN1Q9NPG3 1134 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 ACP6Q9NPH0 428 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 CCDC87Q9NVE4 849 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 CDK5RAP2Q96SN8 1893 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 A0A1W2PRG0 241 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L15C9J2P7 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L13C9JLJ4 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L11C9JVI0 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L18D6R9N7 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L22D6RA61 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L17D6RBQ6 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L19D6RCP7 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L20D6RJB6 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 C2CD2LO14523 706 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 GSC2O15499 205 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 PRPF4O43172 522 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPOPO43791 374 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 NMT1P30419 496 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 VASPP50552 380 aaPredicted RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 MCL1Q07820 350 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L24Q0WX57 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 AP1B1Q10567 949 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPARCL1Q14515 664 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 PKN2Q16513 984 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 LRRC23Q53EV4 343 aaPredicted RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 TTBK2Q6IQ55 1244 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 USP17L6PQ6QN14 398 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 NSMFQ6X4W1 530 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 TRIM74Q86UV6 250 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 TRIM73Q86UV7 250 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 ARHGEF19Q8IW93 802 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 C4orf33Q8N1A6 199 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 KIAA1586Q9HCI6 787 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 NPHS2Q9NP85 383 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SAR1AQ9NR31 198 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 ANAPC5Q9UJX4 755 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 R3HDM2Q9Y2K5 976 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 NEU2Q9Y3R4 380 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 IRS2Q9Y4H2 1338 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 PNMA6FA0A0J9YX94 578 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 PDLIM1O00151 329 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 LYNP07948 512 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ZCCHC18P0CG32 403 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ATF2P15336 505 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 EIF6P56537 245 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 MYL7Q01449 175 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 STAT4Q14765 748 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 MAPK6Q16659 721 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 CYP4F22Q6NT55 531 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 PPP1R18Q6NYC8 613 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SESTD1Q86VW0 696 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ADGRF4Q8IZF3 695 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 RFWD2Q8NHY2 731 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ZNF564Q8TBZ8 553 aaPredicted RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 KAT5Q92993 513 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 GBP5Q96PP8 586 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 BTBD10Q9BSF8 475 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 NUP85Q9BW27 656 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 TRAIPQ9BWF2 469 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ADAM33Q9BZ11 813 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 FAM192AQ9GZU8 254 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 BHMT2Q9H2M3 363 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 TRABDQ9H4I3 376 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 STX18Q9P2W9 335 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 SUGT1Q9Y2Z0 365 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31A5Q5VU36 1347 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31A6Q5VVP1 1343 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31A7Q8IWB4 1347 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SGPL1O95470 568 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 LDHBP07195 334 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 SNHG28P0DPA3 235 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SLC16A2P36021 539 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ADCY8P40145 1251 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 CYP2J2P51589 502 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 RTP1P59025 263 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 PPP4CP60510 307 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 CYP4A11Q02928 519 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 RINLQ6ZS11 566 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 NOP9Q86U38 636 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 KLHL23Q8NBE8 558 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ETNPPLQ8TBG4 499 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ZNF75CPQ92670 426 aaPredicted RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 MBOAT7Q96N66 472 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 TUBGCP5Q96RT8 1024 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 P2RX7Q99572 595 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 ZNF184Q99676 751 aaPredicted RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms