RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 S100BP04271 92 aaPredicted RBP10.8□□□□□ -0.68
USP54-201ENST00000339859 DYNLT1P63172 113 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 APBB2Q92870 758 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CGRRF1Q99675 332 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 EDEM3Q9BZQ6 932 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 SP110Q9HB58 689 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 NRBP1Q9UHY1 535 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 ITGA11Q9UKX5 1188 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CYP3A7-CYP3A51PA0A087WV96 503 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TJP3O95049 919 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CYP3A7P24462 503 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 NR1H3Q13133 447 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TFDP2Q14188 446 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 WDR49Q8IV35 697 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 SPIRE2Q8WWL2 714 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 ANAPC7Q9UJX3 599 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CDY2AQ9Y6F7 541 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 DUSP11O75319 330 aaKnown RBP10.8□□□□□ -0.68
USP54-201ENST00000339859 FARP2O94887 1054 aaPredicted RBP10.8□□□□□ -0.68
USP54-201ENST00000339859 MMP3P08254 477 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 FAM200BP0CF97 657 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 RWDD2BP57060 319 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 NOP14P78316 857 aaKnown RBP10.8□□□□□ -0.68
USP54-201ENST00000339859 PTPROQ16827 1216 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 HPS3Q969F9 1004 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TRIM7Q9C029 511 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 AGPAT3Q9NRZ7 376 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 PCDHB8Q9UN66 801 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 C4AP0C0L4 1744 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 USP54Q70EL1 1684 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CYTH3O43739 400 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 SH3BP5O60239 455 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 B3GAT3O94766 335 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 GOLGA7BQ2TAP0 167 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 KSR1Q8IVT5 923 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 RBBP8NLQ8NC74 664 aaPredicted RBP10.8□□□□□ -0.68
USP54-201ENST00000339859 C7orf43Q8WVR3 580 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 COPS5Q92905 334 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 CYB561D2O14569 222 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 PRKCZQ05513 592 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 PPIGQ13427 754 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP54-201ENST00000339859 NAA35Q5VZE5 725 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TMC7Q7Z402 723 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TTC13Q8NBP0 860 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 MORC4Q8TE76 937 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 MAML3Q96JK9 1138 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 STK33Q9BYT3 514 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 RSAD1Q9HA92 442 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 PLEKHA5Q9HAU0 1116 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 MOCS2O96007 188 aaPredicted RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 KRT7P08729 469 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 NT5DC4Q86YG4 428 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 EFHBQ8N7U6 833 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 USP38Q8NB14 1042 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 BRI3BPQ8WY22 251 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 DHX38Q92620 1227 aaKnown RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 ZMYM2Q9UBW7 1377 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 GPR25O00155 361 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 SEPT4O43236 478 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 CREB3O43889 395 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ZBED1O96006 694 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ZFXP17010 805 aaPredicted RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 CTU1Q7Z7A3 348 aaKnown RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 ADGRF2Q8IZF7 708 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 AGPAT1Q99943 283 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 GLRA4Q5JXX5 417 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 MRRFQ96E11 262 aaKnown RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 IFT43Q96FT9 208 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 NUP85Q9BW27 656 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ABI2Q9NYB9 513 aaPredicted RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 ADCY6O43306 1168 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 NDUFA10O95299 355 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 JRKLQ9Y4A0 524 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 MEIS2O14770 477 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 SLITRK3O94933 977 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ITGA7Q13683 1181 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ACCSLQ4AC99 568 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 PPP6R3Q5H9R7 873 aaPredicted RBP10.79□□□□□ -0.68
USP54-201ENST00000339859 OLFML2BQ68BL8 750 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 SARM1Q6SZW1 724 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 ZNF677Q86XU0 584 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 EPAS1Q99814 870 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 SNTG2Q9NY99 539 aa10.79□□□□□ -0.68
USP54-201ENST00000339859 HARS2P49590 506 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 DDX53Q86TM3 631 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 ARFGAP2Q8N6H7 521 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ZNF564Q8TBZ8 553 aaPredicted RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 CELF4Q9BZC1 486 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 BTBD7Q9P203 1132 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 LIMA1Q9UHB6 759 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 SNHG28P0DPA3 235 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 IRF1P10914 325 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 KLRC2P26717 231 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 DENND2CQ68D51 928 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 MRPS31Q92665 395 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 PDE11AQ9HCR9 933 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 CYP26A1O43174 497 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 RTN2O75298 545 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 RARRES1P49788 294 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 THOC5Q13769 683 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms