RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HSD17B4P51659 736 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 TRIM60Q495X7 471 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 DEPDC1Q5TB30 811 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 DTX3LQ8TDB6 740 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 HIST1H2AHQ96KK5 128 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 HIST1H2AJQ99878 128 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 H2AFJQ9BTM1 129 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 DCP1AQ9NPI6 582 aaPredicted RBP13.29□□□□□ -0.28
SDC3-201ENST00000336798 MROH7-TTC4A0A0A0MT08 1334 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 RAD23BP54727 409 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 NECTIN1Q15223 517 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 PDXDC1Q6P996 788 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ZNF512Q96ME7 567 aaPredicted RBP13.29□□□□□ -0.28
SDC3-201ENST00000336798 GPBP1L1Q9HC44 474 aaPredicted RBP13.29□□□□□ -0.28
SDC3-201ENST00000336798 CD274Q9NZQ7 290 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 APRTP07741 180 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 SCP2P22307 547 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 NUDT18Q6ZVK8 323 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 KIAA2013Q8IYS2 634 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 ARHGAP18Q8N392 663 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 STX19Q8N4C7 294 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.29□□□□□ -0.28
SDC3-201ENST00000336798 LY9Q9HBG7 655 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 NDE1Q9NXR1 346 aa13.29□□□□□ -0.28
SDC3-201ENST00000336798 BICRAQ9NZM4 1560 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ACTR2P61160 394 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 MEI1Q5TIA1 1274 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 CHMP1BQ7LBR1 199 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 DTNBP1Q96EV8 351 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 PAWRQ96IZ0 340 aaKnown RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 ZFP42Q96MM3 310 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ZNF185O15231 689 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 RPS6KA4O75676 772 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 DGKIO75912 1065 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 FKBP9O95302 570 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 AKR1B1P15121 316 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 FKBP9P1Q75LS8 142 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 MAGEB10Q96LZ2 347 aaPredicted RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 AMACRQ9UHK6 382 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 KBTBD13C9JR72 458 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ENO3P13929 434 aaPredicted RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 IL10P22301 178 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 TEDDM1Q5T9Z0 273 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 LVRNQ6Q4G3 990 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 HAUS6Q7Z4H7 955 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 LDHDQ86WU2 507 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 CYGBQ8WWM9 190 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 VMP1Q96GC9 406 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 FAM49BQ9NUQ9 324 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 KDM5DQ9BY66 1539 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 KRT87PA6NCN2 255 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ATP1A1P05023 1023 aaKnown RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 STAT5BP51692 787 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ATPAF2Q8N5M1 289 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ASAP3Q8TDY4 903 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ZNF560Q96MR9 790 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 MXD3Q9BW11 206 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 JPH1Q9HDC5 661 aaPredicted RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 CPDO75976 1380 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 A0A0G2JLW4 131 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 KDM1AO60341 852 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 ZNF157P51786 506 aaPredicted RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 CAV1Q03135 178 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 FAM20AQ96MK3 541 aa13.28□□□□□ -0.28
SDC3-201ENST00000336798 NFKBIL1Q9UBC1 381 aaPredicted RBP13.28□□□□□ -0.28
SDC3-201ENST00000336798 OR1G1P47890 313 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 RPS6P62753 249 aaKnown RBP13.27□□□□□ -0.28
SDC3-201ENST00000336798 BTKQ06187 659 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 ARHGEF7Q14155 803 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 GRM4Q14833 912 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 C1orf131Q8NDD1 294 aaKnown RBP13.27□□□□□ -0.28
SDC3-201ENST00000336798 MCEEQ96PE7 176 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 PEG3Q9GZU2 1588 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 GMNCA6NCL1 334 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 USP27XA6NNY8 438 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 NDUFS3O75489 264 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 WDR47O94967 919 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 CHGBP05060 677 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 CLEC10AQ8IUN9 316 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 ZC3H15Q8WU90 426 aaKnown RBP13.27□□□□□ -0.28
SDC3-201ENST00000336798 FOPNLQ96NB1 174 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 WNT8AQ9H1J5 351 aa13.27□□□□□ -0.28
SDC3-201ENST00000336798 MRPL40Q9NQ50 206 aaKnown RBP13.27□□□□□ -0.28
SDC3-201ENST00000336798 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.28
SDC3-201ENST00000336798 LSM7Q9UK45 103 aaKnown RBP13.27□□□□□ -0.28
SDC3-201ENST00000336798 AKAP10O43572 662 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 MZF1P28698 734 aaPredicted RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 MRPL28Q13084 256 aaKnown RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 P3H1Q32P28 736 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 PROM2Q8N271 834 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 SH3TC2Q8TF17 1288 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 NPHS2Q9NP85 383 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 ARHGEF38Q9NXL2 777 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 NPC1L1Q9UHC9 1359 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 SLC16A1P53985 500 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 HDAC4P56524 1084 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 CCDC142Q17RM4 750 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 NAIF1Q69YI7 327 aaPredicted RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 UBA3Q8TBC4 463 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 AGPAT1Q99943 283 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms