RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GPR142Q7Z601 462 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PRRT2Q7Z6L0 340 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 TBC1D31Q96DN5 1066 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 HPDLQ96IR7 371 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 TBCBQ99426 244 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GPRC5CQ9NQ84 441 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 RRAGDQ9NQL2 400 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PFDN4Q9NQP4 134 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PARVAQ9NVD7 372 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 A0A087WZ62 844 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 BTBD19C9JJ37 291 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GIPC1O14908 333 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CTSHP09668 335 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PSMA2P25787 234 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CDR2Q01850 454 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 LRRC55Q6ZSA7 311 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 OTUD6BQ8N6M0 293 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF564Q8TBZ8 553 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 FDXACB1Q9BRP7 624 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 COLEC11Q9BWP8 271 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 NMRK2Q9NPI5 230 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ALS2Q96Q42 1657 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZBED1O96006 694 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 KRT1P04264 644 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RAD51Q06609 339 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ENPEPQ07075 957 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 PSMD6Q15008 389 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 GRIK4Q16099 956 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ZACNQ401N2 412 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 EFHC1Q5JVL4 640 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 SCARA5Q6ZMJ2 495 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 KCNK18Q7Z418 384 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 DDX56Q9NY93 547 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 BFARQ9NZS9 450 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 DSEQ9UL01 958 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 GRID2IPA4D2P6 1211 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FAM187AA6NFU0 413 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RSPH10B2B2RC85 870 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 F8W8V4 182 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ATP9AO75110 1047 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RSPH10BP0C881 870 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 PDGFRAP16234 1089 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 KRT15P19012 456 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FLT3LGP49771 235 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 PSEN2P49810 448 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 MARSP56192 900 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 COG7P83436 770 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 NAA35Q5VZE5 725 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 C4orf32Q8N8J7 132 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 VPS39Q96JC1 886 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RRN3Q9NYV6 651 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 OGFRQ9NZT2 677 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 SLC8A2Q9UPR5 921 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 C2CD2Q9Y426 696 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FHOD1Q9Y613 1164 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 MYO7AQ13402 2215 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 SPTBN2O15020 2390 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 IGLV3-22A0A075B6J6 115 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 KLRC4O43908 158 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 COBLO75128 1261 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FGGP02679 453 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 VDRP11473 427 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 MCL1Q07820 350 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 MUM1L1Q5H9M0 696 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 EFHC2Q5JST6 749 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 DENND2CQ68D51 928 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 GPIHBP1Q8IV16 184 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 CTAGE3PQ8IX95 158 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 KIAA0895Q8NCT3 520 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 C1orf131Q8NDD1 294 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 TMEM161BQ8NDZ6 487 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 IL31RAQ8NI17 732 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 TAS1R2Q8TE23 839 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 CCDC68Q9H2F9 335 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 DHX33Q9H6R0 707 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 AIPL1Q9NZN9 384 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 NR2E3Q9Y5X4 410 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 SLC2A3P11169 496 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 HNRNPH3P31942 346 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 CLK2P49760 499 aaKnown RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 GUCY2DQ02846 1103 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 LAMTOR4Q0VGL1 99 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FAM102AQ5T9C2 384 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 SCN4BQ8IWT1 228 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ANKS4BQ8N8V4 417 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ZBED3Q96IU2 234 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 EPAS1Q99814 870 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RNF208Q9H0X6 261 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 COL2A1P02458 1487 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 M0QYV0 167 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 ITGB3BPQ13352 177 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 COL9A3Q14050 684 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FBXO47Q5MNV8 452 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 CPLX4Q7Z7G2 160 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 UNC93AQ86WB7 457 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FAXDC2Q96IV6 333 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 RBPJLQ9UBG7 517 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 MID2Q9UJV3 735 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 COL1A2P08123 1366 aa7.29□□□□□ -1.24
SF3B1-201ENST00000335508 FKTNO75072 461 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms