RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ATP5HO75947 161 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 TJP3O95049 919 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 LDHBP07195 334 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 SPATA31C1P0DKV0 1188 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 TAL1P17542 331 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 RPL13P26373 211 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 PTPN4P29074 926 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 GPC5P78333 572 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 DLG4P78352 724 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 LRRC74BQ6ZQY2 392 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 FAM196AQ6ZSG2 479 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 ARHGEF19Q8IW93 802 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 RHOT2Q8IXI1 618 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 NEDD1Q8NHV4 660 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 RFWD2Q8NHY2 731 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 APEX2Q9UBZ4 518 aa14.32□□□□□ -0.12
CCDC88C-201ENST00000331194 A0A1W2PPM1 405 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 ABLIM1O14639 778 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 CDH16O75309 829 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 SGPL1O95470 568 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 HSPA6P17066 643 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 PRR16Q569H4 304 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 RASIP1Q5U651 963 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 PPP1R21Q6ZMI0 780 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 KCTD1Q719H9 257 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 FAM81AQ8TBF8 368 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 MAML1Q92585 1016 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 CD101Q93033 1021 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 PSTPIP2Q9H939 334 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 DNM3Q9UQ16 869 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 ADGRA3Q8IWK6 1321 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 USP17L10C9JJH3 530 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 EXOC3O60645 756 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 EDF1O60869 148 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 SCYL3Q8IZE3 742 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 NUP85Q9BW27 656 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 TMX4Q9H1E5 349 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 WHRNQ9P202 907 aa14.31□□□□□ -0.12
CCDC88C-201ENST00000331194 GCAP28676 217 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 PSMC2P35998 433 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 MCL1Q07820 350 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CTC1Q2NKJ3 1217 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 LRRC23Q53EV4 343 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 PARP10Q53GL7 1025 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 C11orf63Q6NUN7 778 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CLNKQ7Z7G1 428 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 GATA6Q92908 595 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 SNF8Q96H20 258 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 GBP5Q96PP8 586 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 KRT82Q9NSB4 513 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 KANSL3Q9P2N6 904 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 FRMPD4Q14CM0 1322 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 KIF13BQ9NQT8 1826 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 DCTN3O75935 186 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 SKIP12755 728 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CPA2P48052 419 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 RASSF2P50749 326 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 SNAP25P60880 206 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 FASTKD3Q14CZ7 662 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 MAPK6Q16659 721 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 C2CD6Q53TS8 623 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 ANKRD35Q8N283 1001 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 ARHGEF1Q92888 912 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 P2RX7Q99572 595 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 NDNQ99608 321 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 FBXO6Q9NRD1 293 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 MYO3BQ8WXR4 1341 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 ZMYM2Q9UBW7 1377 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 A0A0G2JND7 137 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 TISP43B9A030 160 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 KRT15P19012 456 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 ITIH2P19823 946 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CA4P22748 312 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 PIK3CAP42336 1068 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CLK2P49760 499 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 WDR72Q3MJ13 1102 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 CMPK2Q5EBM0 449 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 LLGL2Q6P1M3 1020 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 MYCT1Q8N699 235 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 SYT2Q8N9I0 419 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 DENND1AQ8TEH3 1009 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 TRABDQ9H4I3 376 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 LRRC19Q9H756 370 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 KIAA1586Q9HCI6 787 aa14.3□□□□□ -0.12
CCDC88C-201ENST00000331194 AMPD1P23109 780 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 CNPY1Q3B7I2 92 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 EAPPQ56P03 285 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 RINLQ6ZS11 566 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 CYP2W1Q8TAV3 490 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 ZNF564Q8TBZ8 553 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 FBXO41Q8TF61 875 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 DYDC2Q96IM9 177 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 TUBGCP5Q96RT8 1024 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 ATP8B3O60423 1300 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 EXOC1LA0A1B0GW35 172 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 GTPBP10A4D1E9 387 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 GSC2O15499 205 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 ZBED4O75132 1171 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 PSMG1O95456 288 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 ATF2P15336 505 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms