RNA–Protein interactions for RNA: ENST00000327554.2

CCDC60-201, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC60, Length 2,450 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-201ENST00000327554 STX18Q9P2W9 335 aaKnown RBP13.6□□□□□ -0.23
CCDC60-201ENST00000327554 DNM3Q9UQ16 869 aa13.6□□□□□ -0.23
CCDC60-201ENST00000327554 RPS6KL1Q9Y6S9 549 aa13.6□□□□□ -0.23
CCDC60-201ENST00000327554 EXOC3O60645 756 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 CCDC22O60826 627 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 LGR5O75473 907 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ATF2P15336 505 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 RPA3P35244 121 aaPredicted RBP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 MYL7Q01449 175 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 COG2Q14746 738 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 SLC1A5Q15758 541 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 GSTA3Q16772 222 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 WDR72Q3MJ13 1102 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ASPRV1Q53RT3 343 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ZNF804AQ7Z570 1209 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 KIAA0825Q8IV33 1275 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 KLHL23Q8NBE8 558 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 HERPUD2Q9BSE4 406 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 MKNK1Q9BUB5 465 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ZWILCHQ9H900 591 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 GPCPD1Q9NPB8 672 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ARL8BQ9NVJ2 186 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 DDX43Q9NXZ2 648 aaKnown RBP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 RRM1P23921 792 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 NR1H3Q13133 447 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ZNF564Q8TBZ8 553 aaPredicted RBP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 DTX3LQ8TDB6 740 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 WDR60Q8WVS4 1066 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ZNF184Q99676 751 aaPredicted RBP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 NAP1L4Q99733 375 aaKnown RBP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 TRABDQ9H4I3 376 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 KIAA1586Q9HCI6 787 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 PHF24Q9UPV7 400 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC60-201ENST00000327554 NEU2Q9Y3R4 380 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 ROBO1Q9Y6N7 1651 aa13.59□□□□□ -0.23
CCDC60-201ENST00000327554 CREB3O43889 395 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 LDHBP07195 334 aaKnown RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 LYNP07948 512 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 ABHD2P08910 425 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 UBTFL6P0CB48 400 aaPredicted RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 SNHG28P0DPA3 235 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 RPA1P27694 616 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 CRKLP46109 303 aaKnown RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 MCL1Q07820 350 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 USP4Q13107 963 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 ZRSR2Q15696 482 aaKnown RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 TRIM74Q86UV6 250 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 TRIM73Q86UV7 250 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 ZNF398Q8TD17 642 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 MBOAT7Q96N66 472 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 NR1H4Q96RI1 486 aaPredicted RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 DDX50Q9BQ39 737 aaKnown RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 NUP85Q9BW27 656 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 SYNCQ9H7C4 482 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 NPHS2Q9NP85 383 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 OLFML3Q9NRN5 406 aa13.58□□□□□ -0.23
CCDC60-201ENST00000327554 CHCHD3Q9NX63 227 aaKnown RBP13.58□□□□□ -0.23
CCDC60-201ENST00000327554 SPATA31A5Q5VU36 1347 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SPATA31A6Q5VVP1 1343 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SPATA31A7Q8IWB4 1347 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 CYP3A7-CYP3A51PA0A087WV96 503 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 MAP3K7O43318 606 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 CYP3A7P24462 503 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 NMT1P30419 496 aaKnown RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 ADCY8P40145 1251 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 VPS41P49754 854 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 NEK3P51956 506 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 EVA1CP58658 441 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 PKN2Q16513 984 aaKnown RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SAMD1Q6SPF0 538 aaPredicted RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 ADGRF4Q8IZF3 695 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 LRRC47Q8N1G4 583 aaKnown RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 ARHGAP18Q8N392 663 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 PPFIBP2Q8ND30 876 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 ZNF75CPQ92670 426 aaPredicted RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 OPTNQ96CV9 577 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SPATA16Q9BXB7 569 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 DCLK3Q9C098 648 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 ZNF212Q9UDV6 495 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SMG5Q9UPR3 1016 aaKnown RBP13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SLC4A7Q9Y6M7 1214 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 IRS2Q9Y4H2 1338 aa13.58□□□□□ -0.24
CCDC60-201ENST00000327554 SFI1A8K8P3 1242 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 EIF3DO15371 548 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC60-201ENST00000327554 TBCAO75347 108 aaKnown RBP13.57□□□□□ -0.24
CCDC60-201ENST00000327554 ZWINTO95229 277 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 CYP1A2P05177 515 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 RFX1P22670 979 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 TDRPQ86YL5 185 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 ARHGEF19Q8IW93 802 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 SLFN12Q8IYM2 578 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 C4orf33Q8N1A6 199 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 ETNPPLQ8TBG4 499 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 PSTPIP2Q9H939 334 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 DMAC2Q9NW81 257 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 WASF2Q9Y6W5 498 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 STRCP1A6NGW2 1772 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 EXOC1LA0A1B0GW35 172 aa13.57□□□□□ -0.24
CCDC60-201ENST00000327554 TYROBPO43914 113 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms