RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MAFGO15525 162 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 ASAP2O43150 1006 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 RPA1P27694 616 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 ADORA2AP29274 412 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 GRB10Q13322 594 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 DEFB115Q30KQ5 88 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 MTERF2Q49AM1 385 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 VWA3BQ502W6 1294 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 ERMARDQ5T6L9 678 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 ANKRD23Q86SG2 305 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 TXNRD2Q9NNW7 524 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 STOML1Q9UBI4 398 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 ARL2BPQ9Y2Y0 163 aa11.63□□□□□ -0.55
LSM3-201ENST00000306024 CYP3A7-CYP3A51PA0A087WV96 503 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 SFI1A8K8P3 1242 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 MED24O75448 989 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 TOMM70O94826 608 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 LINGO3P0C6S8 592 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 CYP3A7P24462 503 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 MAPK4P31152 587 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 GJA5P36382 358 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 PPP1R2P41236 205 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 PMS1P54277 932 aaKnown RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 INHBEP58166 350 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 PPP1R15BQ5SWA1 713 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 FAM178BQ8IXR5 827 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 TRIM9Q9C026 710 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 KCNMB3Q9NPA1 279 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 LARSQ9P2J5 1176 aaKnown RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 SNX24Q9Y343 169 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 CDK5RAP2Q96SN8 1893 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 CCDC188H7C350 402 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 ATP5DP30049 168 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 NCALDP61601 193 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 CALCOCO2Q13137 446 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 MAN2A1Q16706 1144 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 ODR4Q5SWX8 454 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 ZNF662Q6ZS27 426 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 FBXO16Q8IX29 292 aaPredicted RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 MYOCDQ8IZQ8 938 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 VPS52Q8N1B4 723 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 GIMAP8Q8ND71 665 aaPredicted RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 CELF4Q9BZC1 486 aaKnown RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 NRBP2Q9NSY0 501 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 NOC2LQ9Y3T9 749 aaKnown RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 OPHN1O60890 802 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 PPFIA2O75334 1257 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 KLRC1P26715 233 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 POLGP54098 1239 aaPredicted RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 PMS2P54278 862 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 PSMC5P62195 406 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 ZNF268Q14587 947 aaPredicted RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 GALNT15Q8N3T1 639 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 TRIM51Q9BSJ1 452 aa11.62□□□□□ -0.55
LSM3-201ENST00000306024 AGO4Q9HCK5 861 aaKnown RBP11.62□□□□□ -0.55
LSM3-201ENST00000306024 NVLO15381 856 aaKnown RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 IGBP1P78318 339 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 MYLK4Q86YV6 388 aaPredicted RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 SPATA33Q96N06 139 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 TUFT1Q9NNX1 390 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 TRIM33Q9UPN9 1127 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 BRCA1P38398 1863 aaKnown RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 EML1O00423 815 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 ZNF263O14978 683 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 STRNO43815 780 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 STAM2O75886 525 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 SHBGP04278 402 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 DEUP1Q05D60 604 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 CST9Q5W186 159 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 ANKRD40Q6AI12 368 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 APLFQ8IW19 511 aaPredicted RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 FAM133AQ8N9E0 248 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 SCFD2Q8WU76 684 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 GINS2Q9Y248 185 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 C5orf60A6NFR6 353 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 MYMKA6NI61 221 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 ATP2A1O14983 1001 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 ZC3H12AQ5D1E8 599 aaKnown RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 C6orf163Q5TEZ5 329 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 RNF220Q5VTB9 566 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 PADI6Q6TGC4 694 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 OTOP1Q7RTM1 612 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 SH3RF1Q7Z6J0 888 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 SAPCD2Q86UD0 394 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 METTL13Q8N6R0 699 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 C1orf131Q8NDD1 294 aaKnown RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 ETNPPLQ8TBG4 499 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 CTNNBL1Q8WYA6 563 aaPredicted RBP11.61□□□□□ -0.55
LSM3-201ENST00000306024 AMFRQ9UKV5 643 aa11.61□□□□□ -0.55
LSM3-201ENST00000306024 TMEM110-MUSTN1A8MSY1 372 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 EYA4O95677 639 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 SERPING1P05155 500 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 MRPS9P82933 396 aaKnown RBP11.6□□□□□ -0.55
LSM3-201ENST00000306024 NOGQ13253 232 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 UNC13DQ70J99 1090 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 SLC5A5Q92911 643 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 HPS3Q969F9 1004 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 TCHPQ9BT92 498 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 ZNF302Q9NR11 478 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms