RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FAM47DPA6NHR8 397 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 GNAT1P11488 350 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 ITGA4P13612 1032 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 KCTD2Q14681 263 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 PPM1NQ8N819 430 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 NAF1Q96HR8 494 aaKnown RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 RBM15Q96T37 977 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHH-201ENST00000297261 LXNQ9BS40 222 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 FAM129AQ9BZQ8 928 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 HOXC10Q9NYD6 342 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 HAO1Q9UJM8 370 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 MAGED2Q9UNF1 606 aaPredicted RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 MARK3P27448 753 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 GABPAQ06546 454 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 STAT4Q14765 748 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 TRMT10CQ7L0Y3 403 aaKnown RBP16.27■□□□□ 0.2
SHH-201ENST00000297261 FRMD5Q7Z6J6 570 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 TMEM139Q8IV31 216 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 ARHGAP18Q8N392 663 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 SLC13A1Q9BZW2 595 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 KDM4CQ9H3R0 1056 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 ZFATQ9P243 1243 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 ERVK-9P63128 1117 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 GJB7Q6PEY0 223 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 ZNF280CQ8ND82 737 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 CDHR1Q96JP9 859 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 KLF6Q99612 283 aaPredicted RBP16.27■□□□□ 0.2
SHH-201ENST00000297261 ZWILCHQ9H900 591 aa16.27■□□□□ 0.2
SHH-201ENST00000297261 TJP3O95049 919 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 VIL1P09327 827 aaKnown RBP16.27■□□□□ 0.19
SHH-201ENST00000297261 ZNF394Q53GI3 561 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 TPCN2Q8NHX9 752 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 PAPOLBQ9NRJ5 636 aaKnown RBP16.27■□□□□ 0.19
SHH-201ENST00000297261 EPS15L1Q9UBC2 864 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 TBX3O15119 743 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 CPA2P48052 419 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 ANKMY2Q8IV38 441 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 TEX9Q8N6V9 391 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 FIS1Q9Y3D6 152 aa16.27■□□□□ 0.19
SHH-201ENST00000297261 FAM237AA0A1B0GTK4 181 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ZNF233A6NK53 670 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ENO1P06733 434 aaKnown RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 NMT1P30419 496 aaKnown RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 PEX3P56589 373 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 DEUP1Q05D60 604 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 FIGNQ5HY92 759 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 FAM83AQ86UY5 434 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 OTUD5Q96G74 571 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 AGPAT1Q99943 283 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 PDGFDQ9GZP0 370 aaPredicted RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 KBTBD4Q9NVX7 518 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 APOBEC2Q9Y235 224 aaKnown RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 KLRG2A4D1S0 409 aaPredicted RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 LPXNO60711 386 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 CCDC22O60826 627 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 NOP14P78316 857 aaKnown RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 ZNF844Q08AG5 666 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 PADI6Q6TGC4 694 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.26■□□□□ 0.19
SHH-201ENST00000297261 TTC25Q96NG3 672 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 KMT5AQ9NQR1 393 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 WDR64B1ANS9 1081 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ZCCHC18P0CG32 403 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 KCTD19Q17RG1 926 aaPredicted RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 PREPLQ4J6C6 727 aaPredicted RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 ANKRD20A4Q4UJ75 823 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ANKRD20A2Q5SQ80 823 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 ANKRD20A1Q5TYW2 823 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 SLC30A5Q8TAD4 765 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 OLFM3Q96PB7 478 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 SUCLA2Q9P2R7 463 aaPredicted RBP16.26■□□□□ 0.19
SHH-201ENST00000297261 SSX2IPQ9Y2D8 614 aa16.26■□□□□ 0.19
SHH-201ENST00000297261 RCCD1A6NED2 376 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 GIPC1O14908 333 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 ART3Q13508 389 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MTERF2Q49AM1 385 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MAP7D3Q8IWC1 876 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 XXYLT1Q8NBI6 393 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 NSUN6Q8TEA1 469 aaKnown RBP16.25■□□□□ 0.19
SHH-201ENST00000297261 CAMKK2Q96RR4 588 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 TBC1D22BQ9NU19 505 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MARCOQ9UEW3 520 aaPredicted RBP16.25■□□□□ 0.19
SHH-201ENST00000297261 C15orf41Q9Y2V0 281 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 EMSYQ7Z589 1322 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 YDJCA8MPS7 323 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 OPLAHO14841 1288 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 TMEM191BP0C7N4 346 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 COMTP21964 271 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 SNX16P57768 344 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 NBPF12Q5TAG4 269 aaPredicted RBP16.25■□□□□ 0.19
SHH-201ENST00000297261 KCTD6Q8NC69 237 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 RNF34Q969K3 372 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 SH2D3AQ9BRG2 576 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MRPL46Q9H2W6 279 aaKnown RBP16.25■□□□□ 0.19
SHH-201ENST00000297261 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 CYP26A1O43174 497 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 ATMINO43313 823 aaPredicted RBP16.25■□□□□ 0.19
SHH-201ENST00000297261 KCNMA1Q12791 1236 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 MED21Q13503 144 aa16.25■□□□□ 0.19
SHH-201ENST00000297261 BAATQ14032 418 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms