RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TOB1P50616 345 aaPredicted RBP14□□□□□ -0.17
CD44-203ENST00000278386 ANGPT1Q15389 498 aa14□□□□□ -0.17
CD44-203ENST00000278386 AXDND1Q5T1B0 1012 aaPredicted RBP14□□□□□ -0.17
CD44-203ENST00000278386 DTHD1Q6ZMT9 781 aa14□□□□□ -0.17
CD44-203ENST00000278386 ASCL5Q7RTU5 278 aa14□□□□□ -0.17
CD44-203ENST00000278386 FRMD5Q7Z6J6 570 aa14□□□□□ -0.17
CD44-203ENST00000278386 DTWD2Q8NBA8 298 aa14□□□□□ -0.17
CD44-203ENST00000278386 DDX27Q96GQ7 796 aaKnown RBP14□□□□□ -0.17
CD44-203ENST00000278386 KIF2CQ99661 725 aa14□□□□□ -0.17
CD44-203ENST00000278386 ACO2Q99798 780 aaKnown RBP14□□□□□ -0.17
CD44-203ENST00000278386 TCHPQ9BT92 498 aa14□□□□□ -0.17
CD44-203ENST00000278386 ARHGEF3Q9NR81 526 aa14□□□□□ -0.17
CD44-203ENST00000278386 PATJQ8NI35 1801 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 PRR23AA6NEV1 266 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 PROB1E7EW31 1015 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 HOXA9P31269 272 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 PRPHP41219 470 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 BRCC3P46736 316 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 RAD51AP2Q09MP3 1159 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 UPP1Q16831 310 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 C8orf34Q49A92 452 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 SPECC1Q5M775 1068 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 DCLRE1AQ6PJP8 1040 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 ANKS3Q6ZW76 656 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 DAW1Q8N136 415 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 C3orf58Q8NDZ4 430 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 CDK5RAP3Q96JB5 506 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 SNX27Q96L92 541 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 TARS2Q9BW92 718 aaKnown RBP13.99□□□□□ -0.17
CD44-203ENST00000278386 TMEM134Q9H6X4 195 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.99□□□□□ -0.17
CD44-203ENST00000278386 SLC38A7Q9NVC3 462 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 ARHGAP28Q9P2N2 729 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 ANKFY1Q9P2R3 1169 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 DAXXQ9UER7 740 aaPredicted RBP13.99□□□□□ -0.17
CD44-203ENST00000278386 CDH7Q9ULB5 785 aa13.99□□□□□ -0.17
CD44-203ENST00000278386 ZFP37Q9Y6Q3 630 aaPredicted RBP13.99□□□□□ -0.17
CD44-203ENST00000278386 COL4A3Q01955 1670 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 VPS13AQ96RL7 3174 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 SMIM28A0A1B0GU29 152 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 ANHXE9PGG2 379 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 H3BQV1 296 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 PODXLO00592 558 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 SLC16A4O15374 487 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 MATR3P43243 847 aaKnown RBP eCLIP13.98□□□□□ -0.17
CD44-203ENST00000278386 SOX4Q06945 474 aaPredicted RBP13.98□□□□□ -0.17
CD44-203ENST00000278386 STRN3Q13033 797 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 RAB33AQ14088 237 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 NOLC1Q14978 699 aaKnown RBP eCLIP13.98□□□□□ -0.17
CD44-203ENST00000278386 RABEP1Q15276 862 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 IL17AQ16552 155 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 PABPC1LQ4VXU2 614 aaKnown RBP13.98□□□□□ -0.17
CD44-203ENST00000278386 RINT1Q6NUQ1 792 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 PARM1Q6UWI2 310 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 MPZL3Q6UWV2 235 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 MTSS1LQ765P7 747 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 TAS1R3Q7RTX0 852 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 KCNK18Q7Z418 384 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 ING5Q8WYH8 240 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 FGF13Q92913 245 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 FGF14Q92915 247 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 NKD2Q969F2 451 aaPredicted RBP13.98□□□□□ -0.17
CD44-203ENST00000278386 ACAP3Q96P50 834 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 HCFC1R1Q9NWW0 138 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 RBM19Q9Y4C8 960 aaKnown RBP13.98□□□□□ -0.17
CD44-203ENST00000278386 NUB1Q9Y5A7 615 aa13.98□□□□□ -0.17
CD44-203ENST00000278386 ANK1P16157 1881 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 CFAP54Q96N23 3096 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 FANCMQ8IYD8 2048 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 SFI1A8K8P3 1242 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 MCF2P10911 925 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 IGFBP6P24592 240 aaPredicted RBP13.97□□□□□ -0.17
CD44-203ENST00000278386 ARPP19P56211 112 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 MAPK7Q13164 816 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 UVSSAQ2YD98 709 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 RILPL1Q5EBL4 403 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 RSPO2Q6UXX9 243 aaPredicted RBP13.97□□□□□ -0.17
CD44-203ENST00000278386 C1orf186Q6ZWK4 172 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 ITFG1Q8TB96 612 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 PLIN2Q99541 437 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 KXD1Q9BQD3 176 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 MMTAG2Q9BU76 263 aaKnown RBP13.97□□□□□ -0.17
CD44-203ENST00000278386 TIPINQ9BVW5 301 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 C17orf75Q9HAS0 396 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 SLC2A4RGQ9NR83 387 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 BACE2Q9Y5Z0 518 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 TCHHQ07283 1943 aa13.97□□□□□ -0.17
CD44-203ENST00000278386 ZFHX2Q9C0A1 2572 aaPredicted RBP13.97□□□□□ -0.17
CD44-203ENST00000278386 VWA3AA6NCI4 1184 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 PRRG1O14668 218 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 LRG1P02750 347 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 DCNP07585 359 aaKnown RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 POU2F2P09086 479 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 GUCY2CP25092 1073 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 GJB2P29033 226 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 ELF1P32519 619 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 MCM4P33991 863 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 SMTNP53814 917 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 ATP2C1P98194 919 aaPredicted RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 ROR1Q01973 937 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms