RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 UBA7P41226 1012 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 RRP1BQ14684 758 aaKnown RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 DPP8Q6V1X1 898 aaPredicted RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 CCDC80Q76M96 950 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 MTDHQ86UE4 582 aaKnown RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 NELFCDQ8IXH7 590 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 PRR11Q96HE9 360 aaPredicted RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 HES6Q96HZ4 224 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 DHRS1Q96LJ7 313 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 OSGEPQ9NPF4 335 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 BARHL2Q9NY43 387 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 LSM1O15116 133 aaKnown RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 VILLO15195 856 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 AKR1B1P15121 316 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 PRUNE1Q86TP1 453 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 ST13P4Q8IZP2 240 aaPredicted RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 CEP70Q8NHQ1 597 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 C10orf82Q8WW14 230 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 ECSITQ9BQ95 431 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 COA1Q9GZY4 146 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 CDC42EP4Q9H3Q1 356 aaKnown RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 SUCLA2Q9P2R7 463 aaPredicted RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 PPP1R9AQ9ULJ8 1098 aa16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 R3HDM2Q9Y2K5 976 aaKnown RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 COL11A2P13942 1736 aaPredicted RBP16.71■□□□□ 0.27
CTDSP1-201ENST00000273062 CALML3P27482 149 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 CACNB3P54284 484 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 DSG1Q02413 1049 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 CDC16Q13042 620 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 LRRC8BQ6P9F7 803 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 KLHL35Q6PF15 583 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 ATP11CQ8NB49 1132 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 RIN3Q8TB24 985 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 SYNCQ9H7C4 482 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 USP29Q9HBJ7 922 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 USP40Q9NVE5 1235 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 GRID1Q9ULK0 1009 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 RPL26L1Q9UNX3 145 aaKnown RBP16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 CCDC194A0A1B0GVG4 234 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 HTR3EA5X5Y0 456 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 GSC2O15499 205 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NDUFB5O43674 189 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NPR1P16066 1061 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 ZFXP17010 805 aaPredicted RBP16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 GTF2H1P32780 548 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 CA8P35219 290 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 PTGIRP43119 386 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 LRRC41Q15345 812 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 EAPPQ56P03 285 aaPredicted RBP16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 RBM26Q5T8P6 1007 aaKnown RBP16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 TTC27Q6P3X3 843 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 SLFN11Q7Z7L1 901 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NLGN1Q8N2Q7 840 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NME8Q8N427 588 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 STMN2Q93045 179 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 PIGSQ96S52 555 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NACA2Q9H009 215 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 SH3GLB2Q9NR46 395 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 ZFP69BQ9UJL9 534 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 NAGPAQ9UK23 515 aa16.7■□□□□ 0.26
CTDSP1-201ENST00000273062 ATP9BO43861 1147 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ACTN1P12814 892 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 PCSK6P29122 969 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 TRAPPC10P48553 1259 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 CCR3P51677 355 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 MTTPP55157 894 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 NFIAQ12857 509 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ASIC2Q16515 512 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 PLEKHG4Q58EX7 1191 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 TMEM63BQ5T3F8 832 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 PHLDB2Q86SQ0 1253 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ZFPM1Q8IX07 1006 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 SCYL3Q8IZE3 742 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ZDHHC14Q8IZN3 488 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 SYN2Q92777 582 aaPredicted RBP16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 CYTH2Q99418 400 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ZNF287Q9HBT7 754 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ARL8BQ9NVJ2 186 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ZNF212Q9UDV6 495 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 PCDHA3Q9Y5H8 950 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 BTNL10A8MVZ5 291 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 STK10O94804 968 aaKnown RBP16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 RARGP13631 454 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 TMEM266Q2M3C6 531 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 SHROOM1Q2M3G4 852 aaPredicted RBP16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ALKBH5Q6P6C2 394 aaKnown RBP16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 NANOGNBQ7Z5D8 188 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 CLNKQ7Z7G1 428 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 CCDC125Q86Z20 511 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 CTNNBL1Q8WYA6 563 aaPredicted RBP16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 FNBP1Q96RU3 617 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 ARPC5LQ9BPX5 153 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 UBN1Q9NPG3 1134 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 BTBD7Q9P203 1132 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 PTPN22Q9Y2R2 807 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 STARD13Q9Y3M8 1113 aa16.69■□□□□ 0.26
CTDSP1-201ENST00000273062 DDX3YO15523 660 aaKnown RBP16.68■□□□□ 0.26
CTDSP1-201ENST00000273062 DCTN3O75935 186 aa16.68■□□□□ 0.26
CTDSP1-201ENST00000273062 ARFIP2P53365 341 aa16.68■□□□□ 0.26
CTDSP1-201ENST00000273062 NAPAP54920 295 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms