RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YDR262W	Q12331	272 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	SPO24	Q3E752	67 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	YDR034W-B	Q6Q5X2	51 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	RNA14	P25298	677 aa	Known RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	VAM7	P32912	316 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	RCN1	P36054	211 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	FMP46	P36141	133 aa	Known RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	COX14	P39103	70 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	YJL213W	P40896	331 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	NUP57	P48837	541 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	CWC23	P52868	283 aa	Predicted RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	CDH1	P53197	566 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	SYF2	P53277	215 aa	Predicted RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	RRN9	P53437	365 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	RHO3	Q00245	231 aa	Known RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	CAB5	Q03941	241 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	PEX10	Q05568	337 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	MRPL35	Q06678	367 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	THP3	Q12049	470 aa	Known RBP	3.36	□□□□□ -1.87
UBX5	YDR330W	YOL107W	Q12239	342 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	YLR108C	Q12259	485 aa		3.36	□□□□□ -1.87
UBX5	YDR330W	CAR2	P07991	424 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	MET2	P08465	486 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	YOL163W	P0CF20	169 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	RPS16A	P0CX51	143 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	RPS16B	P0CX52	143 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	RPB5	P20434	215 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	MCK1	P21965	375 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	PPH21	P23594	369 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	TAH1	P25638	111 aa	Predicted RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	SUI1	P32911	108 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	RTC2	P38279	296 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	YHK8	P38776	514 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	GEP4	P38812	185 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	AIM10	P39965	576 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	RPL10	P41805	221 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	LOC1	P43586	204 aa	Predicted RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	COS10	P52924	374 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	MPC1	P53157	130 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	VOA1	P53262	265 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	DBP6	P53734	629 aa	Known RBP	3.35	□□□□□ -1.87
UBX5	YDR330W	CRZ1	P53968	678 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	HXT11	P54862	567 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	SNZ1	Q03148	297 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	YML096W	Q04489	525 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	RTT103	Q05543	409 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	BOP2	Q06150	570 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	FDH1	Q08911	376 aa		3.35	□□□□□ -1.87
UBX5	YDR330W	GCN3	P14741	305 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	SNF6	P18888	332 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	SAR1	P20606	190 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	YBR137W	P38276	179 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	WSC4	P38739	605 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	PFS1	P38872	237 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	NVJ1	P38881	321 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	TIF34	P40217	347 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	YJL218W	P40892	196 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	SER2	P42941	309 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	NCA3	P46955	337 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	YAE1	P47118	141 aa	Predicted RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	BAT2	P47176	376 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	YDL186W	P48568	277 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	ARO8	P53090	500 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	LSG1	P53145	640 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	MSO1	P53604	210 aa	Known RBP	3.34	□□□□□ -1.87
UBX5	YDR330W	COS1	P53822	381 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	WSC2	P53832	503 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	NAT4	Q04751	285 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	ELP6	Q04868	273 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	MMT2	Q08970	484 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	TAO3	P40468	2376 aa		3.34	□□□□□ -1.87
UBX5	YDR330W	CHA1	P25379	360 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	YPS1	P32329	569 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	SPT14	P32363	452 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	CDC13	P32797	924 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	ZRT3	P34240	503 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	YHR035W	P38769	630 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	IPI1	P38803	334 aa	Predicted RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	BAT1	P38891	393 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	YIL029C	P40538	142 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	GDS1	P41913	522 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	WWM1	P43582	211 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	RPS12	P48589	143 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	MRH4	P53166	561 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	MKC7	P53379	596 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	OST6	Q03723	332 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	YLR173W	Q06247	608 aa		3.34	□□□□□ -1.88
UBX5	YDR330W	MEX67	Q99257	599 aa	Known RBP	3.34	□□□□□ -1.88
UBX5	YDR330W	YEL009C-A	A0A023PZF2	135 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	GDH1	P07262	454 aa	Known RBP	3.33	□□□□□ -1.88
UBX5	YDR330W	YOL162W	P0CF19	215 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	DPM1	P14020	267 aa	Known RBP	3.33	□□□□□ -1.88
UBX5	YDR330W	ERD1	P16151	362 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	MXR2	P25566	168 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	HSP30	P25619	332 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
UBX5	YDR330W	TIR2	P33890	251 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	SRX1	P36077	127 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	YBR063C	P38083	404 aa		3.33	□□□□□ -1.88
UBX5	YDR330W	SHE1	P38200	338 aa		3.33	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 17 ms