RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YLR046C	Q12253	270 aa		5.11	□□□□□ -1.59
TRP1	YDR007W	MRPL23	Q12487	163 aa	Predicted RBP	5.11	□□□□□ -1.59
TRP1	YDR007W	RIB3	Q99258	208 aa		5.11	□□□□□ -1.59
TRP1	YDR007W	RPL4A	P10664	362 aa	Known RBP	5.1	□□□□□ -1.59
TRP1	YDR007W	TCP1	P12612	559 aa	Known RBP	5.1	□□□□□ -1.59
TRP1	YDR007W	IFM1	P25038	676 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	AGA1	P32323	725 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	YIL029C	P40538	142 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	ASG7	P46993	209 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	RPL4B	P49626	362 aa	Known RBP	5.1	□□□□□ -1.59
TRP1	YDR007W	RIB4	P50861	169 aa	Predicted RBP	5.1	□□□□□ -1.59
TRP1	YDR007W	PNC1	P53184	216 aa	Known RBP	5.1	□□□□□ -1.59
TRP1	YDR007W	YPL113C	Q02961	396 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	PEX12	Q04370	399 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	YLR173W	Q06247	608 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	APC9	Q12107	265 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	YOR114W	Q12219	294 aa		5.1	□□□□□ -1.59
TRP1	YDR007W	HTB1	P02293	131 aa	Known RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	HTB2	P02294	131 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	MATALPHA1	P0CY06	175 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	HMLALPHA1	P0CY07	175 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	MAK31	P23059	88 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	DCC1	P25559	380 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.59	not detected
TRP1	YDR007W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.59	not detected
TRP1	YDR007W	IST2	P38250	946 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	RBG1	P39729	369 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	AVT2	P39981	480 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	RGI1	P40043	161 aa	Predicted RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	BTT1	P40314	149 aa	Predicted RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	PMT4	P46971	762 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	SNN1	P48232	102 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	YGL039W	P53183	348 aa	Known RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	SSU72	P53538	206 aa	Predicted RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	NUP49	Q02199	472 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	MRPS17	Q03246	237 aa	Predicted RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	CSM3	Q04659	317 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	GAT3	Q07928	141 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	ESA1	Q08649	445 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	PPT2	Q12036	173 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	PCC1	Q3E833	88 aa		5.09	□□□□□ -1.59
TRP1	YDR007W	MEX67	Q99257	599 aa	Known RBP	5.09	□□□□□ -1.59
TRP1	YDR007W	PIS1	P06197	220 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	CDC33	P07260	213 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	ARF2	P19146	181 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	DAL81	P21657	970 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	CPR4	P25334	318 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	RNP1	P32385	249 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	ECT1	P33412	323 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	ZRT3	P34240	503 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	SSS1	P35179	80 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	PHO89	P38361	574 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	UFD1	P53044	361 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	YGR042W	P53227	271 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	LST7	P53237	242 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	YGR168C	P53293	376 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	LSM7	P53905	115 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	SLM2	P53955	656 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	KTR6	P54070	446 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	ECM18	Q04623	453 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	PAL1	Q05518	499 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	YDR278C	Q05612	105 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	YGK3	Q12222	375 aa	Predicted RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	SFM1	Q12314	213 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	EFG1	Q3E705	233 aa	Known RBP	5.08	□□□□□ -1.6
TRP1	YDR007W	YCR024C-B	Q3E7Z8	88 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	SUS1	Q6WNK7	96 aa		5.08	□□□□□ -1.6
TRP1	YDR007W	YRF1-3	P0CX14	1859 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	YRF1-7	P0CX15	1859 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	YRF1-6	P53819	1859 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	SPS2	P08459	502 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	SSA3	P09435	649 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	RPL31A	P0C2H8	113 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	PET9	P18239	318 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	PHO80	P20052	293 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	MAG1	P22134	296 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	ERG9	P29704	444 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	DEG1	P31115	442 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	SPS19	P32573	292 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	LHP1	P33399	275 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	PRS3	P38689	320 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	PRM5	P40476	318 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	MRX5	P47007	382 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	RPN14	P53196	417 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	YGR017W	P53210	297 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	MAK3	Q03503	176 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	TRM12	Q04235	462 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	RTN1	Q04947	295 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	RRG8	Q06109	277 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	YDR018C	Q12185	396 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	PST2	Q12335	198 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	EAF3	Q12432	401 aa		5.07	□□□□□ -1.6
TRP1	YDR007W	DET1	Q99288	334 aa	Known RBP	5.07	□□□□□ -1.6
TRP1	YDR007W	THP2	O13539	261 aa	Known RBP	5.06	□□□□□ -1.6
TRP1	YDR007W	TRP1	P00912	224 aa		5.06	□□□□□ -1.6
TRP1	YDR007W	CYC3	P06182	269 aa		5.06	□□□□□ -1.6
TRP1	YDR007W	RPS18A	P0CX55	146 aa	Known RBP	5.06	□□□□□ -1.6
TRP1	YDR007W	RPS18B	P0CX56	146 aa	Predicted RBP	5.06	□□□□□ -1.6
TRP1	YDR007W	UTR1	P21373	530 aa		5.06	□□□□□ -1.6
TRP1	YDR007W	IDP1	P21954	428 aa	Known RBP	5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms