RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	QDR3	P38227	689 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	YAE1	P47118	141 aa	Predicted RBP	4.09	□□□□□ -1.75
CDC48	YDL126C	DIE2	P50076	525 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	GTR2	P53290	341 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	HCH1	P53834	153 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	ATG4	P53867	494 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	COG5	P53951	403 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	TIM44	Q01852	431 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	YPL080C	Q02826	108 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	GOT1	Q03554	138 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	NAT4	Q04751	285 aa		4.09	□□□□□ -1.75
CDC48	YDL126C	CHO1	P08456	276 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YFL068W	P0CX99	160 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YLL066W-A	P0CY00	160 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YLL067W-A	P0CY01	160 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	RPL24B	P24000	155 aa	Known RBP	4.09	□□□□□ -1.76
CDC48	YDL126C	PDC2	P32896	925 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	PMU1	P36069	295 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YHK8	P38776	514 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	SEC72	P39742	193 aa	Known RBP	4.09	□□□□□ -1.76
CDC48	YDL126C	PAN6	P40459	309 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	NSE4	P43124	402 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	HIT1	P46973	164 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	GPI1	P53306	609 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YNL260C	P53846	198 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	CTF19	Q02732	369 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	GIS1	Q03833	894 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	CAC2	Q04199	468 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	RAD34	Q06665	692 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	YOR365C	Q08844	703 aa		4.09	□□□□□ -1.76
CDC48	YDL126C	RPL18A	P0CX49	186 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	RPL18B	P0CX50	186 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	ART10	P18634	518 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	MRPL9	P31334	269 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	TOA2	P32774	122 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	TRS65	P32893	560 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
CDC48	YDL126C	EFM1	P38732	585 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	RFC4	P40339	323 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	YGL114W	P53134	725 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	CPR8	P53728	308 aa		4.08	□□□□□ -1.76
CDC48	YDL126C	RRP45	Q05636	305 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	AHA1	Q12449	350 aa	Known RBP	4.08	□□□□□ -1.76
CDC48	YDL126C	THP2	O13539	261 aa	Known RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	ARF2	P19146	181 aa	Known RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	MAK32	P23060	363 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	BUB2	P26448	306 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	IST2	P38250	946 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	SHG1	P38337	142 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	IPT1	P38954	527 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	VPS52	P39904	641 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	HEM14	P40012	539 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YPS6	P40583	537 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YGL159W	P53110	370 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YDR124W	Q04608	324 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	PAM18	Q07914	168 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	ERG27	Q12452	347 aa	Known RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	PSF1	Q12488	208 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YIR021W-A	Q3E739	70 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	MEX67	Q99257	599 aa	Known RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	CDC21	P06785	304 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	DST1	P07273	309 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	PET9	P18239	318 aa	Known RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	IFM1	P25038	676 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	BUB3	P26449	341 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	ARO7	P32178	256 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YOX1	P34161	385 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	IPI1	P38803	334 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC48	YDL126C	CYC2	P38909	366 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	PHO90	P39535	881 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	RBG1	P39729	369 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	MOB1	P40484	314 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YIR035C	P40579	254 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	ATG27	P46989	271 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	SOL1	P50278	321 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YNL140C	P53910	189 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YNL095C	P53932	642 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	IRC15	Q02733	499 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	GAS3	Q03655	524 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	IRC10	Q08118	586 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	RGT2	Q12300	763 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	YOR338W	Q99326	363 aa		4.07	□□□□□ -1.76
CDC48	YDL126C	BCY1	P07278	416 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	EHD3	P28817	500 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	TIP20	P33891	701 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	RCK1	P38622	512 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	BUR6	P40096	142 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	TMN2	Q04562	672 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	RIF2	Q06208	395 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	SSK1	Q07084	712 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	YLR108C	Q12259	485 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	SFM1	Q12314	213 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	YFR010W-A	P0C5N0	62 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	URA6	P15700	204 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	GAS1	P22146	559 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	RFA3	P26755	122 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	PEX4	P29340	183 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	SOF1	P33750	489 aa	Known RBP	4.06	□□□□□ -1.76
CDC48	YDL126C	DTR1	P38125	572 aa		4.06	□□□□□ -1.76
CDC48	YDL126C	GPX2	P38143	162 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms