RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SNX29Q8TEQ0 813 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 RTP3Q9BQQ7 232 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 C17orf75Q9HAS0 396 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 DDX19AQ9NUU7 478 aaKnown RBP20.27■□□□□ 0.84
CLN3-241ENST00000635861 TNFSF13BQ9Y275 285 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 CFAP54Q96N23 3096 aa20.27■□□□□ 0.84
CLN3-241ENST00000635861 K7ERI5 159 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 AOC1P19801 751 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 PTGDRQ13258 359 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 ECM1Q16610 540 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 LIN9Q5TKA1 542 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 FAM171A1Q5VUB5 890 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 KRT79Q5XKE5 535 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 LNX1Q8TBB1 728 aaPredicted RBP20.27■□□□□ 0.83
CLN3-241ENST00000635861 KIF2CQ99661 725 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 TIPINQ9BVW5 301 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 TMEM134Q9H6X4 195 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 KCNG1Q9UIX4 513 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 FBXL21Q9UKT6 434 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 DNM3Q9UQ16 869 aa20.27■□□□□ 0.83
CLN3-241ENST00000635861 H0Y858 1186 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 EDN1P05305 212 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 POU2F2P09086 479 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 SPATA31D3P0C874 917 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 RPL17P18621 184 aaKnown RBP20.26■□□□□ 0.83
CLN3-241ENST00000635861 EEF1DP3Q658K8 133 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 CWF19L1Q69YN2 538 aaKnown RBP20.26■□□□□ 0.83
CLN3-241ENST00000635861 PRSS55Q6UWB4 352 aaPredicted RBP20.26■□□□□ 0.83
CLN3-241ENST00000635861 SPATA31D4Q6ZUB0 917 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 GLYCTKQ8IVS8 523 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 RABGGTAQ92696 567 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 DRC1Q96MC2 740 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 MYADMQ96S97 322 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 CLSTN3Q9BQT9 956 aa20.26■□□□□ 0.83
CLN3-241ENST00000635861 TOPORSQ9NS56 1045 aaPredicted RBP20.26■□□□□ 0.83
CLN3-241ENST00000635861 RIF1Q5UIP0 2472 aaKnown RBP20.25■□□□□ 0.83
CLN3-241ENST00000635861 MIA3Q5JRA6 1907 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 TRAPPC3O43617 180 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 SRFP11831 508 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 LAMP2P13473 410 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 LIG1P18858 919 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 TOB1P50616 345 aaPredicted RBP20.25■□□□□ 0.83
CLN3-241ENST00000635861 DMP1Q13316 513 aaPredicted RBP20.25■□□□□ 0.83
CLN3-241ENST00000635861 NT5DC1Q5TFE4 455 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 DCLRE1AQ6PJP8 1040 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 FLCNQ8NFG4 579 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 HASPINQ8TF76 798 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 PPP1R10Q96QC0 940 aaKnown RBP20.25■□□□□ 0.83
CLN3-241ENST00000635861 GDAQ9Y2T3 454 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 RBM19Q9Y4C8 960 aaKnown RBP20.25■□□□□ 0.83
CLN3-241ENST00000635861 NOTCH4Q99466 2003 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 FAM186AA6NE01 2351 aa20.25■□□□□ 0.83
CLN3-241ENST00000635861 GFRA3O60609 400 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 FGFR3P22607 806 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 NBL1P41271 181 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 GRM5P41594 1212 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 YARSP54577 528 aaKnown RBP20.24■□□□□ 0.83
CLN3-241ENST00000635861 UVSSAQ2YD98 709 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 DTHD1Q6ZMT9 781 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 CEP57Q86XR8 500 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 SLC44A3Q8N4M1 653 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 KIFC3Q9BVG8 833 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 CCDC94Q9BW85 323 aaPredicted RBP20.24■□□□□ 0.83
CLN3-241ENST00000635861 MRPL4Q9BYD3 311 aaKnown RBP20.24■□□□□ 0.83
CLN3-241ENST00000635861 SLC38A7Q9NVC3 462 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 FAM86C1Q9NVL1 165 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 CACNG4Q9UBN1 327 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 PCDHB6Q9Y5E3 794 aa20.24■□□□□ 0.83
CLN3-241ENST00000635861 ANHXE9PGG2 379 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 XYLBO75191 536 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 NPR3P17342 541 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 NPTX2P47972 431 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 RAB33AQ14088 237 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 NBR1Q14596 966 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 RILPL1Q5EBL4 403 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 XKR4Q5GH76 650 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 PPM1LQ5SGD2 360 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 GET4Q7L5D6 327 aaPredicted RBP20.23■□□□□ 0.83
CLN3-241ENST00000635861 SIX5Q8N196 739 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 ACO2Q99798 780 aaKnown RBP20.23■□□□□ 0.83
CLN3-241ENST00000635861 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.23■□□□□ 0.83
CLN3-241ENST00000635861 ARHGAP28Q9P2N2 729 aa20.23■□□□□ 0.83
CLN3-241ENST00000635861 CCDC169A6NNP5 214 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 B3GAT3O94766 335 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 C8AP07357 584 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 FSHRP23945 695 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 PEX3P56589 373 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 UPP1Q16831 310 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 ANKS3Q6ZW76 656 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 CCDC105Q8IYK2 499 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 DDX27Q96GQ7 796 aaKnown RBP20.22■□□□□ 0.83
CLN3-241ENST00000635861 PTPRHQ9HD43 1115 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 MTRRQ9UBK8 725 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 USP20Q9Y2K6 914 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 BACE2Q9Y5Z0 518 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 WDR87Q6ZQQ6 2873 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 PTPRZ1P23471 2315 aaPredicted RBP20.22■□□□□ 0.83
CLN3-241ENST00000635861 DMDP11532 3685 aa20.22■□□□□ 0.83
CLN3-241ENST00000635861 FANCMQ8IYD8 2048 aa20.21■□□□□ 0.83
CLN3-241ENST00000635861 E9PMD0 336 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms