RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 LNX1Q8TBB1 728 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 UBA3Q8TBC4 463 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 CYFIP2Q96F07 1278 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 C16orf70Q9BSU1 422 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 GREB1LQ9C091 1923 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 NXF3Q9H4D5 531 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 C1orf112Q9NSG2 853 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 MAP3K20Q9NYL2 800 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 NAGPAQ9UK23 515 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 MYO6Q9UM54 1294 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 BRCA1P38398 1863 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 MMP3P08254 477 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 PRKAR2AP13861 404 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 YY1P25490 414 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 SOX5P35711 763 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 VAV2P52735 878 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 LAMC2Q13753 1193 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 HSP90AA2PQ14568 343 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 BRDTQ58F21 947 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 CRELD2Q6UXH1 353 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 C12orf29Q8N999 325 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 HEMGNQ9BXL5 484 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 APOBEC3GQ9HC16 384 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 ITIH6Q6UXX5 1313 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 HBP1O60381 514 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 TACC1O75410 805 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 RGS7P49802 495 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 NCKAP1LP55160 1127 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 SF3A3Q12874 501 aaKnown RBP eCLIP11.34□□□□□ -0.595e-6■■■■□ 19.6
VPS11-208ENST00000621676 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS11-208ENST00000621676 CTNNBL1Q8WYA6 563 aaPredicted RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 PCDHB18PQ96TA0 734 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 TRMT13Q9NUP7 481 aaKnown RBP11.34□□□□□ -0.59
VPS11-208ENST00000621676 AGAP1Q9UPQ3 857 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 SAR1BQ9Y6B6 198 aa11.34□□□□□ -0.59
VPS11-208ENST00000621676 TMEM88BA6NKF7 163 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 MAFO75444 373 aaPredicted RBP11.33□□□□□ -0.6
VPS11-208ENST00000621676 SMIM10L2AP0DMW4 78 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 SMIM10L2BP0DMW5 78 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 GHRP10912 638 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 MARCKSL1P49006 195 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 UHMK1Q8TAS1 419 aaKnown RBP11.33□□□□□ -0.6
VPS11-208ENST00000621676 RAET1EQ8TD07 263 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 HAUS1Q96CS2 278 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 KIF12Q96FN5 646 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 MRPL4Q9BYD3 311 aaKnown RBP11.33□□□□□ -0.6
VPS11-208ENST00000621676 RABEP2Q9H5N1 569 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 ARHGAP28Q9P2N2 729 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 MYH9P35579 1960 aaKnown RBP11.33□□□□□ -0.6
VPS11-208ENST00000621676 LACTBL1A8MY62 500 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 H2AFZP0C0S5 128 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 STAG3L1P0CL83 205 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 KAZNQ674X7 775 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 H2AFVQ71UI9 128 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 ANKRD23Q86SG2 305 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 STKLD1Q8NE28 680 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 BORCS6Q96GS4 357 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 PRIMPOLQ96LW4 560 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 HMGXB4Q9UGU5 601 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 STK24Q9Y6E0 443 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 PAPPA2Q9BXP8 1791 aa11.33□□□□□ -0.6
VPS11-208ENST00000621676 ATAD5Q96QE3 1844 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 POLR2BP30876 1174 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 MAPK4P31152 587 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 ARL2P36404 184 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 THPOP40225 353 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 NOP14P78316 857 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 FSCN1Q16658 493 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 DUSP28Q4G0W2 176 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 XRRA1Q6P2D8 792 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 MAMDC4Q6UXC1 1216 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CTU1Q7Z7A3 348 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 VPS36Q86VN1 386 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 EFCAB13Q8IY85 973 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 WNT8BQ93098 351 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 NAA15Q9BXJ9 866 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 IMPG2Q9BZV3 1241 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 RPF1Q9H9Y2 349 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 IFT122Q9HBG6 1241 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 ZCCHC17Q9NP64 241 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 DNAJC17Q9NVM6 304 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 DMAC2Q9NW81 257 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 SNX9Q9Y5X1 595 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PI4K2BG5E9Z4 385 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 O00370 1275 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 STRNO43815 780 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 MSCO60682 206 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PPFIA4O75335 1185 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 ACAT1P24752 427 aaKnown RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 NAMPTP43490 491 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 BCAR1P56945 870 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 SNX1Q13596 522 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 TRIP13Q15645 432 aaPredicted RBP11.32□□□□□ -0.6
VPS11-208ENST00000621676 SLC18A3Q16572 532 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CDO1Q16878 200 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 JADE1Q6IE81 842 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 MTHFD1LQ6UB35 978 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 TRAPPC11Q7Z392 1133 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 TRPV1Q8NER1 839 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 SLC35G2Q8TBE7 412 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms