RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	PLCG1	P19174	1290 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	REST	Q13127	1097 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	KARS	Q15046	597 aa	Known RBP	27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	GLRA4	Q5JXX5	417 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	CEP120	Q8N960	986 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	UROC1	Q96N76	676 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	TTPAL	Q9BTX7	342 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	CLIC4	Q9Y696	253 aa		27.63	■■■□□ 2.01
VEGFA-228	ENST00000617771	TOM1L1	O75674	476 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	BRD1	O95696	1058 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	OSTN	P61366	133 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	ZXDA	P98168	799 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	CACNB1	Q02641	598 aa	Predicted RBP	27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	DHX8	Q14562	1220 aa	Known RBP	27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	C15orf39	Q6ZRI6	1047 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	CMAS	Q8NFW8	434 aa	Predicted RBP	27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	HDAC7	Q8WUI4	952 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	RAD54L	Q92698	747 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	ACAP3	Q96P50	834 aa		27.62	■■■□□ 2.01
VEGFA-228	ENST00000617771	C2CD4D	B7Z1M9	353 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	PTPA	Q15257	358 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	FAM171A1	Q5VUB5	890 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	ZPBP2	Q6X784	338 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	TDRD5	Q8NAT2	981 aa	Known RBP	27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	REEP2	Q9BRK0	252 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	CCSER1	Q9C0I3	900 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	BLOC1S4	Q9NUP1	217 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	SLC38A7	Q9NVC3	462 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	ANKFY1	Q9P2R3	1169 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	UST	Q9Y2C2	406 aa		27.61	■■■□□ 2.01
VEGFA-228	ENST00000617771	SMIM28	A0A1B0GU29	152 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	TMEM189-UBE2V1	I3L0A0	370 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	ABLIM1	O14639	778 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	FAM13A	O94988	1023 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	KRT18	P05783	430 aa	Known RBP	27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	HARS	P12081	509 aa	Known RBP	27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	SCP2	P22307	547 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	NCKAP1L	P55160	1127 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	MCM6	Q14566	821 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	NOLC1	Q14978	699 aa	Known RBP eCLIP	27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	PTPN21	Q16825	1174 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	XKR4	Q5GH76	650 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	RTP2	Q5QGT7	225 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	PDXDC1	Q6P996	788 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	DCLRE1A	Q6PJP8	1040 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	ALKAL1	Q6UXT8	129 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	CYP26C1	Q6V0L0	522 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	CEP57	Q86XR8	500 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	PALB2	Q86YC2	1186 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	PLEKHA4	Q9H4M7	779 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	FOXD4L1	Q9NU39	408 aa		27.6	■■■□□ 2.01
VEGFA-228	ENST00000617771	B3GAT3	O94766	335 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	PRSS55	Q6UWB4	352 aa	Predicted RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	TRIM67	Q6ZTA4	783 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	CCDC149	Q6ZUS6	474 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	GLYCTK	Q8IVS8	523 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	PLCD3	Q8N3E9	789 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	MYCT1	Q8N699	235 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	LRRC15	Q8TF66	581 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	PIK3R5	Q8WYR1	880 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	LARP4B	Q92615	738 aa	Known RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	BICD1	Q96G01	975 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	ZBTB45	Q96K62	511 aa	Predicted RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	SNX27	Q96L92	541 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	PARVG	Q9HBI0	331 aa		27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	ARIH1	Q9Y4X5	557 aa	Predicted RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	SRPRB	Q9Y5M8	271 aa	Known RBP	27.59	■■■□□ 2.01
VEGFA-228	ENST00000617771	CLDN3	O15551	220 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	TGM5	O43548	720 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	RPL17	P18621	184 aa	Known RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	MARCKS	P29966	332 aa	Predicted RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	CLCNKB	P51801	687 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	HAUS6	Q7Z4H7	955 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	KCNN1	Q92952	543 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	ACSF2	Q96CM8	615 aa	Predicted RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	DDX27	Q96GQ7	796 aa	Known RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	RHOBTB2	Q9BYZ6	727 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	CCDC39	Q9UFE4	941 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	FBXO2	Q9UK22	296 aa	Predicted RBP	27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	MTMR6	Q9Y217	621 aa		27.58	■■■□□ 2.01
VEGFA-228	ENST00000617771	CCDC195	A0A1B0GUA6	201 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	TRAPPC3	O43617	180 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	STX6	O43752	255 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	TBCA	O75347	108 aa	Known RBP	27.57	■■■□□ 2
VEGFA-228	ENST00000617771	KCNE1	P15382	129 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	DDIT3	P35638	169 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	TXLNA	P40222	546 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	MATR3	P43243	847 aa	Known RBP eCLIP	27.57	■■■□□ 2
VEGFA-228	ENST00000617771	ZNF131	P52739	623 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	MCL1	Q07820	350 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	PSMD5	Q16401	504 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	UPP1	Q16831	310 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	FAM173B	Q6P4H8	233 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	ZDHHC14	Q8IZN3	488 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	EPSTI1	Q96J88	318 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	MFSD14A	Q96MC6	490 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	GOLGA2P5	Q9HBQ8	144 aa		27.57	■■■□□ 2
VEGFA-228	ENST00000617771	CNTN3	Q9P232	1028 aa		27.57	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms