RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CYP2C9P11712 490 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 MARK3P27448 753 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 GTF2H1P32780 548 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 RXRGP48443 463 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 PPIDQ08752 370 aaKnown RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 MGAT5Q09328 741 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 TCP10Q12799 353 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 PPP2R5BQ15173 497 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 KRT26Q7Z3Y9 468 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 CABP7Q86V35 215 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 CACTIN-AS1Q8N1I8 211 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 CERS5Q8N5B7 392 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 HEPHQ9BQS7 1158 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 TMEM60Q9H2L4 133 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 DDX18Q9NVP1 670 aaKnown RBP10.88□□□□□ -0.67
VPS39-214ENST00000614932 MKS1Q9NXB0 559 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 SEL1LQ9UBV2 794 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 ZNF212Q9UDV6 495 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 DAGLAQ9Y4D2 1042 aa10.88□□□□□ -0.67
VPS39-214ENST00000614932 PDS5AQ29RF7 1337 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 NPHP3-ACAD11A0A0J9YXS1 232 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 CCDC194A0A1B0GVG4 234 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 CCDC169A6NNP5 214 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 SPDYE16A6NNV3 312 aaPredicted RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 USP17L5A8MUK1 530 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 BHMG1C9JSJ3 638 aaPredicted RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 RGS16O15492 202 aaPredicted RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 ONECUT3O60422 494 aaPredicted RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 OPHN1O60890 802 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 AGTP01019 485 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 NEK3P51956 506 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 ACVR2BQ13705 512 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 LRP8Q14114 963 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 SHROOM1Q2M3G4 852 aaPredicted RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 C4orf50Q6ZRC1 276 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 SATL1Q86VE3 508 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 NELFCDQ8IXH7 590 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 KBTBD2Q8IY47 623 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 VPS50Q96JG6 964 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 PPP1R10Q96QC0 940 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 ZC3H12CQ9C0D7 883 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 PARVBQ9HBI1 364 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 METTL14Q9HCE5 456 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 DDX4Q9NQI0 724 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 KRT82Q9NSB4 513 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 NOX1Q9Y5S8 564 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 COL24A1Q17RW2 1714 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 UMODL1Q5DID0 1318 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 GOLGA8TH3BQL2 631 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 BBOX1O75936 387 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 OR6B1O95007 311 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 MMP10P09238 476 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 ADRA2BP18089 450 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 TARSP26639 723 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 TKTP29401 623 aaKnown RBP10.87□□□□□ -0.67
VPS39-214ENST00000614932 VPS41P49754 854 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 ZBTB17Q13105 803 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 FAM209AQ5JX71 171 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 SYCP2LQ5T4T6 812 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 DGKHQ86XP1 1220 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 ECHDC2Q86YB7 292 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 USP38Q8NB14 1042 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 TRPC4APQ8TEL6 797 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 STARD8Q92502 1023 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 CEP295NLQ96MC4 621 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 HGH1Q9BTY7 390 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 MYLK2Q9H1R3 596 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 ATP6V0A2Q9Y487 856 aa10.87□□□□□ -0.67
VPS39-214ENST00000614932 LGALS16A8MUM7 142 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 TBX10O75333 385 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 EYA4O95677 639 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 IL1R1P14778 569 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 NAPAP54920 295 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 RAB15P59190 212 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 MAP3K10Q02779 954 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 LETM2Q2VYF4 491 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 VWA3BQ502W6 1294 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 DPP8Q6V1X1 898 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 ALDH16A1Q8IZ83 802 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 SLC7A6OSQ96CW6 309 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 NSMCE3Q96MG7 304 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 NOX5Q96PH1 765 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 GSDMAQ96QA5 445 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PIGSQ96S52 555 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 CLK4Q9HAZ1 481 aaKnown RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 AGPAT5Q9NUQ2 364 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 STX18Q9P2W9 335 aaKnown RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 TTC7AQ9ULT0 858 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 NR2E3Q9Y5X4 410 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 TLDC2A0PJX2 215 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 SH3PXD2BA1X283 911 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 ADAM23O75077 832 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 KRT36O76013 467 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 PSMG1O95456 288 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 AKR1B1P15121 316 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 CSE1LP55060 971 aaKnown RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 PPP4CP60510 307 aa10.86□□□□□ -0.67
VPS39-214ENST00000614932 IFI35P80217 286 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 ATP2C1P98194 919 aaPredicted RBP10.86□□□□□ -0.67
VPS39-214ENST00000614932 DPYDQ12882 1025 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms