RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	TNFSF9	P41273	254 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	CASP5	P51878	434 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMTN	P53814	917 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	MCL1	Q07820	350 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	KCNA1	Q09470	495 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	STRN3	Q13033	797 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	TUSC3	Q13454	348 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	PDE12	Q6L8Q7	609 aa	Known RBP	10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZPBP2	Q6X784	338 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	CCDC73	Q6ZRK6	1079 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	MAP4K3	Q8IVH8	894 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	FAM178B	Q8IXR5	827 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	MRPL43	Q8N983	215 aa	Known RBP	10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMRP1	Q8NCR6	262 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	C3orf58	Q8NDZ4	430 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	GLIS3	Q8NEA6	775 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.81	□□□□□ -0.68	3e-6	■■■■□ 20.1
PTPN2-208	ENST00000589216	KCNN1	Q92952	543 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	PPP2R3C	Q969Q6	453 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	DHX58	Q96C10	678 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	BICD1	Q96G01	975 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	APOL5	Q9BWW9	433 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	GPR62	Q9BZJ7	368 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	TBC1D7	Q9P0N9	293 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	CD207	Q9UJ71	328 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	FRMD3	A2A2Y4	597 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	ANKRD63	C9JTQ0	380 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	C2CD2L	O14523	706 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	MBTPS2	O43462	519 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	CXCL14	O95715	111 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	SOD2	P04179	222 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	TH	P07101	528 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	CXCL8	P10145	99 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	EPCAM	P16422	314 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	ME1	P48163	572 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	XKR4	Q5GH76	650 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	RESP18	Q5W5W9	173 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	FUT10	Q6P4F1	479 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	CD300LG	Q6UXG3	332 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	ALKAL1	Q6UXT8	129 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	SV2B	Q7L1I2	683 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	KCNG4	Q8TDN1	519 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	LEO1	Q8WVC0	666 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	HPS3	Q969F9	1004 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	C18orf25	Q96B23	403 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	CDCA3	Q99618	268 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	TCHP	Q9BT92	498 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	CCDC94	Q9BW85	323 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	ADAM28	Q9UKQ2	775 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	USP15	Q9Y4E8	981 aa	Predicted RBP	10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	IRAK3	Q9Y616	596 aa		10.8	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMIM28	A0A1B0GU29	152 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216		H0YCG3	227 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	NCK2	O43639	380 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	LILRB3	O75022	631 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	ALDH2	P05091	517 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	UROD	P06132	367 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	CNP	P09543	421 aa	Known RBP	10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	MYB	P10242	640 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	IDE	P14735	1019 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	RPL17	P18621	184 aa	Known RBP	10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	GLUD2	P49448	558 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	LIG4	P49917	911 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	GTF2B	Q00403	316 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	SPAG1	Q07617	926 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	COASY	Q13057	564 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMAD4	Q13485	552 aa	Known RBP	10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	SLC10A6	Q3KNW5	377 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	RTP2	Q5QGT7	225 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	KANK3	Q6NY19	840 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	SYCE2	Q6PIF2	218 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	GRAMD1C	Q8IYS0	662 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	SLC22A17	Q8WUG5	538 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	STRA6	Q9BX79	667 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	TRIM9	Q9C026	710 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	ST6GALNAC4	Q9H4F1	302 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	KBTBD4	Q9NVX7	518 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	CNTN3	Q9P232	1028 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	TUBGCP4	Q9UGJ1	667 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	RCOR1	Q9UKL0	485 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216	TRIO	O75962	3097 aa		10.79	□□□□□ -0.68
PTPN2-208	ENST00000589216		A0A0B4J269	797 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	CARNS1	A5YM72	827 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216		I3L4J1	428 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	TEX28	O15482	410 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	POLR2D	O15514	142 aa	Known RBP	10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	CLDN3	O15551	220 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	PDIA4	P13667	645 aa	Known RBP	10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	MATR3	P43243	847 aa	Known RBP eCLIP	10.78	□□□□□ -0.68	4e-9	■■■■■ 32.8
PTPN2-208	ENST00000589216	CLCNKB	P51801	687 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	GUCY2F	P51841	1108 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	YARS	P54577	528 aa	Known RBP	10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	DSG1	Q02413	1049 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZP2	Q05996	745 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMAD2	Q15796	467 aa	Known RBP	10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	ENOX2	Q16206	610 aa	Known RBP	10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	KIAA0319	Q5VV43	1072 aa		10.78	□□□□□ -0.68
PTPN2-208	ENST00000589216	ATL3	Q6DD88	541 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms