RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 LXNQ9BS40 222 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 TMEM117Q9H0C3 514 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 THAP9Q9H5L6 903 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ZNF302Q9NR11 478 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 SAMSN1Q9NSI8 373 aaKnown RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 SPG21Q9NZD8 308 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 RGL1Q9NZL6 768 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 DBR1Q9UK59 544 aaKnown RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 LZTS1Q9Y250 596 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ZKSCAN5Q9Y2L8 839 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 HCFC2Q9Y5Z7 792 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 WDR81Q562E7 1941 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 PRR23AA6NEV1 266 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 DHX15O43143 795 aaKnown RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 CLASP2O75122 1294 aaKnown RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 FAM13AO94988 1023 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ATG7O95352 703 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 CCNE2O96020 404 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 TPM1P09493 284 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 SLC26A2P50443 739 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 NUBP1P53384 320 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 PSMC5P62195 406 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 FAM189BP81408 668 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 FOXK2Q01167 660 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 SMC1AQ14683 1233 aaKnown RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 HSP90AA4PQ58FG1 418 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ZNF484Q5JVG2 852 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 CDKAL1Q5VV42 579 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ASTLQ6HA08 431 aaPredicted RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 MIS18BP1Q6P0N0 1132 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ABHD15Q6UXT9 468 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 OTUD6AQ7L8S5 288 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 TMC6Q7Z403 805 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 FILIP1Q7Z7B0 1213 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 CREBRFQ8IUR6 639 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 CCDC60Q8IWA6 550 aaPredicted RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 CCDC150Q8NCX0 1101 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 PIGOQ8TEQ8 1089 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 NKD2Q969F2 451 aaPredicted RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 DNAJC19Q96DA6 116 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ADAM7Q9H2U9 754 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 ELAC1Q9H777 363 aaKnown RBP11.12□□□□□ -0.63
SS18-210ENST00000578700 ODF2LQ9ULJ1 636 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 AKT3Q9Y243 479 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 PCDHA10Q9Y5I2 948 aa11.12□□□□□ -0.63
SS18-210ENST00000578700 C2orf71A6NGG8 1288 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 SPDYE4A6NLX3 237 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 KCNJ18B7U540 433 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 PROB1E7EW31 1015 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 STK25O00506 426 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 HOXA2O43364 376 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 GPR32O75388 356 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 LYPLA2O95372 231 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 ATP4AP20648 1035 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 FGFR4P22455 802 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 MTHFRP42898 656 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 ID4P47928 161 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 CLCN3P51790 818 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 NLRP11P59045 1033 aaKnown RBP11.11□□□□□ -0.63
SS18-210ENST00000578700 ITIH3Q06033 890 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 RAD51AP2Q09MP3 1159 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 GIT2Q14161 759 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 KCNJ12Q14500 433 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 DSC3Q14574 896 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 BMS1Q14692 1282 aaKnown RBP11.11□□□□□ -0.63
SS18-210ENST00000578700 ATAT1Q5SQI0 421 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 FOXR2Q6PJQ5 311 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 B3GNT9Q6UX72 402 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 ECHDC2Q86YB7 292 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 LRRC43Q8N309 656 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 MRPL43Q8N983 215 aaKnown RBP11.11□□□□□ -0.63
SS18-210ENST00000578700 TDRD5Q8NAT2 981 aaKnown RBP11.11□□□□□ -0.63
SS18-210ENST00000578700 AUTS2Q8WXX7 1259 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 SCLT1Q96NL6 688 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 NECTIN4Q96NY8 510 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 REEP2Q9BRK0 252 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 TIPINQ9BVW5 301 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 RNF19AQ9NV58 838 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 SEL1LQ9UBV2 794 aa11.11□□□□□ -0.63
SS18-210ENST00000578700 LIMA1Q9UHB6 759 aaKnown RBP11.11□□□□□ -0.63
SS18-210ENST00000578700 IGKV6D-21A0A0A0MT36 114 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 N4BP3O15049 544 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 SFPQP23246 707 aaKnown RBP eCLIP11.1□□□□□ -0.63
SS18-210ENST00000578700 PPM1AP35813 382 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 NBL1P41271 181 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 ALDH7A1P49419 539 aaKnown RBP11.1□□□□□ -0.63
SS18-210ENST00000578700 TCP11X2Q5H9J9 407 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 SPECC1LQ69YQ0 1117 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 RINT1Q6NUQ1 792 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 PPFIBP1Q86W92 1011 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 VSTM4Q8IW00 320 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 C4orf19Q8IY42 314 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 SLC39A11Q8N1S5 342 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 LRRC71Q8N4P6 559 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 MYCT1Q8N699 235 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 HELQQ8TDG4 1101 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 SRRTQ9BXP5 876 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms