RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PLSCR1O15162 318 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 SCGB1D2O95969 90 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 HK1P19367 917 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 ACRV1P26436 265 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 CYP2C19P33261 490 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 ALDH1A3P47895 512 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 FXR1P51114 621 aaKnown RBP eCLIP6.2□□□□□ -1.42
NUP88-208ENST00000574087 SCNN1GP51170 649 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 CLRN1P58418 232 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 VPS72Q15906 364 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 DRICH1Q6PGQ1 229 aaPredicted RBP6.2□□□□□ -1.42
NUP88-208ENST00000574087 SEM1Q6ZVN7 128 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 PALM2Q8IXS6 379 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 CHPFQ8IZ52 775 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 IFI44Q8TCB0 444 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 RAB24Q969Q5 203 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 AIFM3Q96NN9 605 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 MNTQ99583 582 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 MRI1Q9BV20 369 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 SLC12A5Q9H2X9 1139 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 SLC23A1Q9UHI7 598 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 TCEAL9Q9UHQ7 104 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 CLCA2Q9UQC9 943 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 HDAC5Q9UQL6 1122 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 XDHP47989 1333 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 PNPLA7Q6ZV29 1317 aa6.2□□□□□ -1.42
NUP88-208ENST00000574087 PRR5-ARHGAP8B1AHC4 643 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 PRRG2O14669 202 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 TEX33O43247 280 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 RPLP2P05387 115 aaKnown RBP6.19□□□□□ -1.42
NUP88-208ENST00000574087 SNRPA1P09661 255 aaKnown RBP6.19□□□□□ -1.42
NUP88-208ENST00000574087 RAP2AP10114 183 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 MAN2A2P49641 1150 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 CTXN1P60606 82 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 RRP1BQ14684 758 aaKnown RBP6.19□□□□□ -1.42
NUP88-208ENST00000574087 ATAT1Q5SQI0 421 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 TTC7BQ86TV6 843 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 HPS3Q969F9 1004 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 GPR87Q9BY21 358 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 FAM30AQ9NZY2 134 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 NCANO14594 1321 aa6.19□□□□□ -1.42
NUP88-208ENST00000574087 GOLGA6L6A8MZA4 724 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 C1QTNF3-AMACRE9PGA6 284 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 PRPF3O43395 683 aaKnown RBP6.18□□□□□ -1.42
NUP88-208ENST00000574087 TSPAN6O43657 245 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 DTNBO60941 627 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 LPOP22079 712 aaPredicted RBP6.18□□□□□ -1.42
NUP88-208ENST00000574087 GTF2H3Q13889 308 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 RAB39AQ14964 217 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 FAM102BQ5T8I3 360 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 NXNQ6DKJ4 435 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 EPM2AIP1Q7L775 607 aaPredicted RBP6.18□□□□□ -1.42
NUP88-208ENST00000574087 RSPH3Q86UC2 560 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 PLXDC1Q8IUK5 500 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 DRC7Q8IY82 874 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 TCEAL8Q8IYN2 117 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 DCBLD1Q8N8Z6 715 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 TFAP2CQ92754 450 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 MVB12AQ96EY5 273 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 TMX3Q96JJ7 454 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 CLPTM1LQ96KA5 538 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 MYOCQ99972 504 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 SPON1Q9HCB6 807 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 CALCOCO1Q9P1Z2 691 aa6.18□□□□□ -1.42
NUP88-208ENST00000574087 ATP5JP18859 108 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 KRTAP10-2P60368 255 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 TLE1Q04724 770 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 PGS1Q32NB8 556 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 SPDYAQ5MJ70 313 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 DACT2Q5SW24 774 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 IFIT1BQ5T764 474 aaKnown RBP6.17□□□□□ -1.42
NUP88-208ENST00000574087 CXorf57Q6NSI4 855 aaKnown RBP6.17□□□□□ -1.42
NUP88-208ENST00000574087 EFCAB12Q6NXP0 572 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 B3GNT9Q6UX72 402 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 TMPRSS6Q8IU80 811 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 SYT12Q8IV01 421 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 ZFP28Q8NHY6 868 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 IL17DQ8TAD2 202 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 EXTL1Q92935 676 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 PGBD4Q96DM1 585 aa6.17□□□□□ -1.42
NUP88-208ENST00000574087 AURKAIP1Q9NWT8 199 aaPredicted RBP6.17□□□□□ -1.42
NUP88-208ENST00000574087 NOB1Q9ULX3 412 aaKnown RBP6.17□□□□□ -1.42
NUP88-208ENST00000574087 RUVBL1Q9Y265 456 aaKnown RBP6.17□□□□□ -1.42
NUP88-208ENST00000574087 KRTAP4-8A0A0G2JLE6 195 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 GRXCR1A8MXD5 290 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 OFD1O75665 1012 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 ADRB1P08588 477 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 MGAT1P26572 445 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 ZNF280AP59817 542 aaPredicted RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 CRHR2Q13324 411 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 CNGB1Q14028 1251 aaPredicted RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 ZNF267Q14586 743 aaPredicted RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 KHDC1Q4VXA5 237 aaKnown RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 ATXN7L2Q5T6C5 722 aaPredicted RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 RNF169Q8NCN4 708 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 SLC35G2Q8TBE7 412 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 TSR2Q969E8 191 aaKnown RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 NDC1Q9BTX1 674 aa6.16□□□□□ -1.42
NUP88-208ENST00000574087 C11orf54Q9H0W9 315 aaPredicted RBP6.16□□□□□ -1.42
NUP88-208ENST00000574087 ZNF703Q9H7S9 590 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms