RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 FBXW11Q9UKB1 542 aa13.25□□□□□ -0.29
VPS9D1-207ENST00000568691 RAB23Q9ULC3 237 aa13.25□□□□□ -0.29
VPS9D1-207ENST00000568691 SDK1Q7Z5N4 2213 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 MYH9P35579 1960 aaKnown RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 SRRM3A6NNA2 597 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 CHURC1-FNTBB4DL54 471 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 K7ESF4 209 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 ADAM12O43184 909 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 PSAPP07602 524 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 CYP3A4P08684 503 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 SPINK2P20155 84 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 OR1G1P47890 313 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 FNTBP49356 437 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 SIM2Q14190 667 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 CCDC6Q16204 474 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 PFKFB3Q16875 520 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 PRSS55Q6UWB4 352 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 LRSAM1Q6UWE0 723 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 ZNF852Q6ZMS4 543 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 SMAP1Q8IYB5 467 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 CCDC148Q8NFR7 591 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 URGCPQ8TCY9 931 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 DDX1Q92499 740 aaKnown RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 FAM167AQ96KS9 214 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 ZNF577Q9BSK1 485 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 BRMS1Q9HCU9 246 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 AGPAT5Q9NUQ2 364 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 NDRG2Q9UN36 371 aaKnown RBP13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 SSX2IPQ9Y2D8 614 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 LAMA5O15230 3695 aa13.24□□□□□ -0.29
VPS9D1-207ENST00000568691 ASH1LQ9NR48 2969 aaKnown RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 WDR81Q562E7 1941 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 CCL16O15467 120 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 PRPF40AO75400 957 aaKnown RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 KCNK5O95279 499 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 YEATS4O95619 227 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 FOSP01100 380 aaPredicted RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 SFPQP23246 707 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 FCARP24071 287 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 RING1Q06587 406 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 RTP2Q5QGT7 225 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 TANGO2Q6ICL3 276 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 GALNT17Q6IS24 598 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 FAM160A2Q8N612 972 aaPredicted RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 GSTCDQ8NEC7 633 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 CCDC12Q8WUD4 166 aaPredicted RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 ING5Q8WYH8 240 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 RABGGTAQ92696 567 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 SYAP1Q96A49 352 aaPredicted RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 PGBD4Q96DM1 585 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 CLSTN3Q9BQT9 956 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 DNMT3BQ9UBC3 853 aaKnown RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 CACNG4Q9UBN1 327 aa13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 MORC2Q9Y6X9 1032 aaPredicted RBP13.23□□□□□ -0.29
VPS9D1-207ENST00000568691 GIPC1O14908 333 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 NCAM2O15394 837 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 DTNBO60941 627 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 ZNF76P36508 570 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 NASPP49321 788 aaPredicted RBP13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 NRLP54845 237 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GUCY1B3Q02153 619 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GNL2Q13823 731 aaKnown RBP13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 SLC5A9Q2M3M2 681 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 IL31Q6EBC2 164 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 FUT10Q6P4F1 479 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 ELMSAN1Q6PJG2 1045 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 CATSPER4Q7RTX7 472 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 NOSTRINQ8IVI9 506 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GPR65Q8IYL9 337 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 LEO1Q8WVC0 666 aaPredicted RBP13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GATA6Q92908 595 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GJA10Q969M2 543 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 SPATA32Q96LK8 384 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 ZFP42Q96MM3 310 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 AIFM3Q96NN9 605 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 FAM193BQ96PV7 902 aaPredicted RBP13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 GAD1Q99259 594 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 LSM14BQ9BX40 385 aaKnown RBP13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 TBC1D22BQ9NU19 505 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 KANSL3Q9P2N6 904 aa13.22□□□□□ -0.29
VPS9D1-207ENST00000568691 NCANO14594 1321 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 CNTNAP2Q9UHC6 1331 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ESYT2A0FGR8 921 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ARL5CA6NH57 179 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ECI2O75521 394 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ZIC2O95409 532 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 HNRNPA1P09651 372 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 CHRNB1P11230 501 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 KRT2P35908 639 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 SCNN1GP51170 649 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ADCY7P51828 1080 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 FOSBP53539 338 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 NAPAP54920 295 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 AP3B2Q13367 1082 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 STPG1Q5TH74 334 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 JAKMIP3Q5VZ66 844 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 PPP1R18Q6NYC8 613 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 ZNF410Q86VK4 478 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 RHPN2Q8IUC4 686 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms