RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	BRD1	O95696	1058 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	C1R	P00736	705 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	WEE2	P0C1S8	567 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MAPT	P10636	758 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MCF2	P10911	925 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PLCG1	P19174	1290 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	SCP2	P22307	547 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PROZ	P22891	400 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MARCKS	P29966	332 aa	Predicted RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	DDIT3	P35638	169 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	GRM5	P41594	1212 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	OSTN	P61366	133 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CREM	Q03060	361 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CEBPZ	Q03701	1054 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	GRIN1	Q05586	938 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ELAVL2	Q12926	359 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	REST	Q13127	1097 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	DHX8	Q14562	1220 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MCM6	Q14566	821 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	KARS	Q15046	597 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PTPA	Q15257	358 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	NAB2	Q15742	525 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZNF568	Q3ZCX4	644 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	XKR4	Q5GH76	650 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	FUT10	Q6P4F1	479 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ELMSAN1	Q6PJG2	1045 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	DCLRE1A	Q6PJP8	1040 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MPZL3	Q6UWV2	235 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	HAUS6	Q7Z4H7	955 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	GPBP1	Q86WP2	473 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CEP57	Q86XR8	500 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PALB2	Q86YC2	1186 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MYCT1	Q8N699	235 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	TMEM161B	Q8NDZ6	487 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	RASSF8	Q8NHQ8	419 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	HDAC7	Q8WUI4	952 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	RIN2	Q8WYP3	895 aa	Predicted RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	EDA	Q92838	391 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	SNX21	Q969T3	373 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZBTB45	Q96K62	511 aa	Predicted RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	B3GALT6	Q96L58	329 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ACAP3	Q96P50	834 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PPP1R10	Q96QC0	940 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	PAAF1	Q9BRP4	392 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CCSER1	Q9C0I3	900 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CDT1	Q9H211	546 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	POMK	Q9H5K3	350 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	SFXN1	Q9H9B4	322 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	TOPORS	Q9NS56	1045 aa	Predicted RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	BLOC1S4	Q9NUP1	217 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	FNIP2	Q9P278	1114 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	CACNG4	Q9UBN1	327 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	ODF2L	Q9ULJ1	636 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MTMR6	Q9Y217	621 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	SRPRB	Q9Y5M8	271 aa	Known RBP	7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	MUC3A	Q02505	3323 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	DENND4A	Q7Z401	1863 aa		7.58	□□□□□ -1.2
SF3B3-209	ENST00000567635	SF3B1	O75533	1304 aa	Known RBP eCLIP	7.57	□□□□□ -1.2	7e-6	■■■■■ 28.7
SF3B3-209	ENST00000567635	CCDC195	A0A1B0GUA6	201 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	ABLIM1	O14639	778 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	CLDN3	O15551	220 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	TRAPPC3	O43617	180 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	STX6	O43752	255 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	TOM1L1	O75674	476 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	B3GAT3	O94766	335 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	FAM13A	O94988	1023 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	GLUD1	P00367	558 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	KRT18	P05783	430 aa	Known RBP	7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	SPATA31D3	P0C874	917 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	NCKAP1L	P55160	1127 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZXDA	P98168	799 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	SLC39A14	Q15043	492 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	SPECC1	Q5M775	1068 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	FAM171A1	Q5VUB5	890 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	FAM173B	Q6P4H8	233 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	LILRA6	Q6PI73	481 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	TMC5	Q6UXY8	1006 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	CYP26C1	Q6V0L0	522 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZPBP2	Q6X784	338 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	SPATA31D4	Q6ZUB0	917 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	USP49	Q70CQ1	688 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	GPR149	Q86SP6	731 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	LRRC15	Q8TF66	581 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	HASPIN	Q8TF76	798 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	LARP4B	Q92615	738 aa	Known RBP	7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	RAD54L	Q92698	747 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	DDX27	Q96GQ7	796 aa	Known RBP	7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	EPSTI1	Q96J88	318 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	UROC1	Q96N76	676 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	REEP2	Q9BRK0	252 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	TTPAL	Q9BTX7	342 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	ZHX3	Q9H4I2	956 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	PLEKHA4	Q9H4M7	779 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	SLC38A7	Q9NVC3	462 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	CCDC39	Q9UFE4	941 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	RAPGEFL1	Q9UHV5	662 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	CDH22	Q9UJ99	828 aa		7.57	□□□□□ -1.2
SF3B3-209	ENST00000567635	FBXO2	Q9UK22	296 aa	Predicted RBP	7.57	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms