RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ADAM7Q9H2U9 754 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 RXFP1Q9HBX9 757 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.49■□□□□ 0.87
CLN3-227ENST00000567495 ABLIM1O14639 778 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 TRAK2O60296 914 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 PPP6R2O75170 966 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 YEATS4O95619 227 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 ZSCAN22P10073 491 aaPredicted RBP20.48■□□□□ 0.87
CLN3-227ENST00000567495 ALADP13716 330 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 CACNB1Q02641 598 aaPredicted RBP20.48■□□□□ 0.87
CLN3-227ENST00000567495 CBX2Q14781 532 aaPredicted RBP20.48■□□□□ 0.87
CLN3-227ENST00000567495 NOLC1Q14978 699 aaKnown RBP eCLIP20.48■□□□□ 0.87
CLN3-227ENST00000567495 NAB2Q15742 525 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 ATL3Q6DD88 541 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 ALKAL1Q6UXT8 129 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 SV2BQ7L1I2 683 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 ZBTB33Q86T24 672 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 BICD1Q96G01 975 aa20.48■□□□□ 0.87
CLN3-227ENST00000567495 DDX27Q96GQ7 796 aaKnown RBP20.48■□□□□ 0.87
CLN3-227ENST00000567495 PPP1R10Q96QC0 940 aaKnown RBP20.48■□□□□ 0.87
CLN3-227ENST00000567495 SMIM28A0A1B0GU29 152 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 CASTOR2A6NHX0 329 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 PI4K2BG5E9Z4 385 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 C2CD2LO14523 706 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 SPTLC2O15270 562 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 KCNE1P15382 129 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 CLCN4P51793 760 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 MCL1Q07820 350 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 PDXDC1Q6P996 788 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 DCLRE1AQ6PJP8 1040 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 TAS1R1Q7RTX1 841 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 RIPOR3Q96MK2 946 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 GPR62Q9BZJ7 368 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 ZHX3Q9H4I2 956 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 FNIP2Q9P278 1114 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 ANKFY1Q9P2R3 1169 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 TBX20Q9UMR3 447 aa20.47■□□□□ 0.87
CLN3-227ENST00000567495 F8W810 466 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 TMEM189-UBE2V1I3L0A0 370 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 K7ENM7 598 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 PIGRP01833 764 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 CLTAP09496 248 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 EPCAMP16422 314 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 STAT6P42226 847 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 MTHFRP42898 656 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 LIG4P49917 911 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 SNX27Q96L92 541 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 FBXL18Q96ME1 805 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 ST6GALNAC4Q9H4F1 302 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 SFXN1Q9H9B4 322 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 PLEKHA5Q9HAU0 1116 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 SEL1LQ9UBV2 794 aa20.46■□□□□ 0.87
CLN3-227ENST00000567495 LOC730098B7Z3J9 87 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 HNRNPDLO14979 420 aaKnown RBP20.45■□□□□ 0.86
CLN3-227ENST00000567495 TEX28O15482 410 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 TRAPPC3O43617 180 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 B3GAT3O94766 335 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 KIF4AO95239 1232 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 GAP43P17677 238 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 MATR3P43243 847 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-227ENST00000567495 OSTNP61366 133 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 GTF2BQ00403 316 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 GLRA4Q5JXX5 417 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 ATAT1Q5SQI0 421 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 CEP120Q8N960 986 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 HDAC7Q8WUI4 952 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 RIN2Q8WYP3 895 aaPredicted RBP20.45■□□□□ 0.86
CLN3-227ENST00000567495 DDX12PQ92771 950 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 ZBTB45Q96K62 511 aaPredicted RBP20.45■□□□□ 0.86
CLN3-227ENST00000567495 PAAF1Q9BRP4 392 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 TTPALQ9BTX7 342 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 CNTN3Q9P232 1028 aa20.45■□□□□ 0.86
CLN3-227ENST00000567495 TFIP11Q9UBB9 837 aaKnown RBP20.45■□□□□ 0.86
CLN3-227ENST00000567495 SPDYE4A6NLX3 237 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 DCXO43602 365 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 GLUD1P00367 558 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 F13A1P00488 732 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 HARSP12081 509 aaKnown RBP20.44■□□□□ 0.86
CLN3-227ENST00000567495 RPL9P32969 192 aaKnown RBP20.44■□□□□ 0.86
CLN3-227ENST00000567495 FAM171A1Q5VUB5 890 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 CYP26C1Q6V0L0 522 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 KCNG4Q8TDN1 519 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 RABGGTAQ92696 567 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 TSPAN18Q96SJ8 248 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 LRRC27Q9C0I9 530 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 CXCL16Q9H2A7 254 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 EPHX3Q9H6B9 360 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 CFAP45Q9UL16 551 aa20.44■□□□□ 0.86
CLN3-227ENST00000567495 UPP1Q16831 310 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 RARS2Q5T160 578 aaKnown RBP20.43■□□□□ 0.86
CLN3-227ENST00000567495 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.43■□□□□ 0.86
CLN3-227ENST00000567495 MAP4K3Q8IVH8 894 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 CMASQ8NFW8 434 aaPredicted RBP20.43■□□□□ 0.86
CLN3-227ENST00000567495 PIK3R5Q8WYR1 880 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 HVCN1Q96D96 273 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 FIZ1Q96SL8 496 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 APOL5Q9BWW9 433 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 CUEDC2Q9H467 287 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 PLEKHA4Q9H4M7 779 aa20.43■□□□□ 0.86
CLN3-227ENST00000567495 NR2E1Q9Y466 385 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms