RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 PSMD5Q16401 504 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 ECM1Q16610 540 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 UVSSAQ2YD98 709 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 MCTP1Q6DN14 999 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 CEP57Q86XR8 500 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 DDX27Q96GQ7 796 aaKnown RBP16.38■□□□□ 0.21
CLN3-222ENST00000566083 B3GALT6Q96L58 329 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.38■□□□□ 0.21
CLN3-222ENST00000566083 KCND2Q9NZV8 630 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 FBXL21Q9UKT6 434 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 GDAQ9Y2T3 454 aa16.38■□□□□ 0.21
CLN3-222ENST00000566083 RFPL2O75678 378 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 KIF4AO95239 1232 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 NPTX2P47972 431 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 SMTNP53814 917 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 PEX3P56589 373 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 NBR1Q14596 966 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 NAB2Q15742 525 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 RTP2Q5QGT7 225 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 NT5DC1Q5TFE4 455 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 ARL6IP4Q66PJ3 421 aaKnown RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 LNX1Q8TBB1 728 aaPredicted RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 ATOH1Q92858 354 aaPredicted RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 ZNF707Q96C28 371 aaPredicted RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 RTP3Q9BQQ7 232 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 PAAF1Q9BRP4 392 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 NTPCRQ9BSD7 190 aaKnown RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 KMT5AQ9NQR1 393 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 WNT16Q9UBV4 365 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 FBXW11Q9UKB1 542 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.37■□□□□ 0.21
CLN3-222ENST00000566083 C2orf16Q68DN1 1984 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 KMT2EQ8IZD2 1858 aa16.37■□□□□ 0.21
CLN3-222ENST00000566083 H3BQV1 296 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 SLC26A4O43511 780 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 HIP1RO75146 1068 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 XYLBO75191 536 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 B3GAT3O94766 335 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 PDGFBP01127 241 aaPredicted RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 POU2F2P09086 479 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 SPATA31D3P0C874 917 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 SCP2P22307 547 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 GUCY2CP25092 1073 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 GRM5P41594 1212 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 EEF1DP3Q658K8 133 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 RINT1Q6NUQ1 792 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 SPATA31D4Q6ZUB0 917 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 ANKS3Q6ZW76 656 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 RABGGTAQ92696 567 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 PPP1R10Q96QC0 940 aaKnown RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 ACO2Q99798 780 aaKnown RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 CLSTN3Q9BQT9 956 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 KIFC3Q9BVG8 833 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 ARHGAP28Q9P2N2 729 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 RIF1Q5UIP0 2472 aaKnown RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 E9PMD0 336 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 H0YCG3 227 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 MCF2P10911 925 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 LAMP2P13473 410 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 RPL17P18621 184 aaKnown RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 FGFR3P22607 806 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 ATP2C1P98194 919 aaPredicted RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 STRN3Q13033 797 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 RAB33AQ14088 237 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 ZNF568Q3ZCX4 644 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 PPM1LQ5SGD2 360 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 HYIQ5T013 277 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 PRSS55Q6UWB4 352 aaPredicted RBP16.36■□□□□ 0.21
CLN3-222ENST00000566083 C1orf186Q6ZWK4 172 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 GLYCTKQ8IVS8 523 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 HASPINQ8TF76 798 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 SPIRE2Q8WWL2 714 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 CDK5RAP3Q96JB5 506 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 ACAP3Q96P50 834 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 TCHPQ9BT92 498 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 BACE2Q9Y5Z0 518 aa16.36■□□□□ 0.21
CLN3-222ENST00000566083 PLXNA3P51805 1871 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 SMIM28A0A1B0GU29 152 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 UPP1Q16831 310 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 XKR4Q5GH76 650 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 AK8Q96MA6 479 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 PTPRHQ9HD43 1115 aa16.35■□□□□ 0.21
CLN3-222ENST00000566083 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.35■□□□□ 0.21
CLN3-222ENST00000566083 DOCK8Q8NF50 2099 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 N4BP1O75113 896 aaKnown RBP16.34■□□□□ 0.21
CLN3-222ENST00000566083 BMP15O95972 392 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 EDN1P05305 212 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 C8AP07357 584 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 SRFP11831 508 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 AOC1P19801 751 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 FSHRP23945 695 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 RPL9P32969 192 aaKnown RBP16.34■□□□□ 0.21
CLN3-222ENST00000566083 MPZL3Q6UWV2 235 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 ALKAL1Q6UXT8 129 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 DAW1Q8N136 415 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 SLC44A3Q8N4M1 653 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 TMEM105Q8N8V8 129 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 SYT2Q8N9I0 419 aaPredicted RBP16.34■□□□□ 0.21
CLN3-222ENST00000566083 FLCNQ8NFG4 579 aa16.34■□□□□ 0.21
CLN3-222ENST00000566083 TMX3Q96JJ7 454 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms