RNA–Protein interactions for RNA: ENST00000564846.1

CLN6-205, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 1,762 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-205ENST00000564846 TFR2Q9UP52 801 aa21.13■□□□□ 0.97
CLN6-205ENST00000564846 C6orf222P0C671 652 aaPredicted RBP21.12■□□□□ 0.97
CLN6-205ENST00000564846 MCF2P10911 925 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 GNAT1P11488 350 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 CYP2C9P11712 490 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 NKX3-2P78367 333 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 EEF1DP3Q658K8 133 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 FAM49AQ9H0Q0 323 aaPredicted RBP21.12■□□□□ 0.97
CLN6-205ENST00000564846 UPF3AQ9H1J1 476 aaKnown RBP21.12■□□□□ 0.97
CLN6-205ENST00000564846 PTPRJQ12913 1337 aa21.12■□□□□ 0.97
CLN6-205ENST00000564846 MAP2K2P36507 400 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 POU5F1Q01860 360 aaKnown RBP21.11■□□□□ 0.97
CLN6-205ENST00000564846 GCNT1Q02742 428 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 BIRC3Q13489 604 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 PCBP1Q15365 356 aaKnown RBP eCLIP21.11■□□□□ 0.97
CLN6-205ENST00000564846 KYAT1Q16773 422 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 WDR44Q5JSH3 913 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 LMBRD2Q68DH5 695 aaPredicted RBP21.11■□□□□ 0.97
CLN6-205ENST00000564846 SLC35F6Q8N357 371 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 GCOM2Q9BZD3 368 aaPredicted RBP21.11■□□□□ 0.97
CLN6-205ENST00000564846 ADAMTS10Q9H324 1103 aa21.11■□□□□ 0.97
CLN6-205ENST00000564846 C17orf102A2RUQ5 167 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 CSDE1O75534 798 aaKnown RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 ERLIN2O94905 339 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 HLA-DRAP01903 254 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 RARBP10826 455 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 HOXD10P28358 340 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 PIK3CAP42336 1068 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 GNASQ5JWF2 1037 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 ZNF710Q8N1W2 664 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 C7orf31Q8N865 590 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 SHC3Q92529 594 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 SECISBP2LQ93073 1101 aaKnown RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 KREMEN1Q96MU8 473 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 MTG1Q9BT17 334 aaPredicted RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 PDZD7Q9H5P4 517 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 C1orf112Q9NSG2 853 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 KAT6AQ92794 2004 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 UQCRHLA0A096LP55 91 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 CTAGE9A4FU28 777 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 TSPAN1O60635 241 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 GPR32O75388 356 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 URI1O94763 535 aaPredicted RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 UQCRHP07919 91 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 ARF4P18085 180 aaPredicted RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 GTF2F1P35269 517 aaKnown RBP eCLIP21.1■□□□□ 0.974e-9■■■■■ 37.4
CLN6-205ENST00000564846 CACNB2Q08289 660 aaPredicted RBP21.1■□□□□ 0.97
CLN6-205ENST00000564846 NAB2Q15742 525 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 KIZQ2M2Z5 673 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 THNSL1Q8IYQ7 743 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 FAM71AQ8IYT1 594 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 KAT5Q92993 513 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 RNF186Q9NXI6 227 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 NAGPAQ9UK23 515 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 ATP8B3O60423 1300 aa21.1■□□□□ 0.97
CLN6-205ENST00000564846 CASP8AP2Q9UKL3 1982 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 MYADML2A6NDP7 307 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 GPR25O00155 361 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 B4GALT4O60513 344 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 TRPA1O75762 1119 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 IL18RAPO95256 599 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 VNN1O95497 513 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 CLTAP09496 248 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 HOXC8P31273 242 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 DUOXA2Q1HG44 320 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 OR5B17Q8NGF7 314 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 SYT11Q9BT88 431 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 RPF1Q9H9Y2 349 aaKnown RBP21.09■□□□□ 0.97
CLN6-205ENST00000564846 NENFQ9UMX5 172 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 DUSP10Q9Y6W6 482 aa21.09■□□□□ 0.97
CLN6-205ENST00000564846 A0A1B0GUA9 196 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 MACROD2A1Z1Q3 448 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 DDX3XO00571 662 aaKnown RBP eCLIP21.08■□□□□ 0.972e-13■■■□□ 16.8
CLN6-205ENST00000564846 PHACTR2O75167 634 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 CAP1Q01518 475 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 NCBP1Q09161 790 aaKnown RBP21.08■□□□□ 0.97
CLN6-205ENST00000564846 HIC1Q14526 733 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 ALKBH5Q6P6C2 394 aaKnown RBP21.08■□□□□ 0.97
CLN6-205ENST00000564846 RUFY4Q6ZNE9 571 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 CDR2LQ86X02 465 aaPredicted RBP21.08■□□□□ 0.97
CLN6-205ENST00000564846 RNF10Q8N5U6 811 aaKnown RBP21.08■□□□□ 0.97
CLN6-205ENST00000564846 SLC30A5Q8TAD4 765 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 NAPGQ99747 312 aaPredicted RBP21.08■□□□□ 0.97
CLN6-205ENST00000564846 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.08■□□□□ 0.977e-7■■■■■ 74.5
CLN6-205ENST00000564846 HDAC6Q9UBN7 1215 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 SRRDQ9UH36 339 aa21.08■□□□□ 0.97
CLN6-205ENST00000564846 TREHO43280 583 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 TRIM32Q13049 653 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 TUBB2AQ13885 445 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 NME8Q8N427 588 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 TATDN2Q93075 761 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 FAM212AQ96EL1 285 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 CPB2Q96IY4 423 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 FAM84AQ96KN4 292 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 ADPGKQ9BRR6 497 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 PI4K2AQ9BTU6 479 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 TUBB2BQ9BVA1 445 aa21.08■□□□□ 0.96
CLN6-205ENST00000564846 USP8P40818 1118 aa21.07■□□□□ 0.96
CLN6-205ENST00000564846 TMEM62Q0P6H9 643 aa21.07■□□□□ 0.96
CLN6-205ENST00000564846 NCOA4Q13772 614 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms