RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TSPAN18Q96SJ8 248 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 TRAIPQ9BWF2 469 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 NXF3Q9H4D5 531 aaKnown RBP13.89□□□□□ -0.19
CLK3-214ENST00000564096 MMRN2Q9H8L6 949 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 GCNT4Q9P109 453 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 IMPACTQ9P2X3 320 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 DAAM1Q9Y4D1 1078 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 IPPQ9Y573 584 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 PCDHB2Q9Y5E7 798 aa13.89□□□□□ -0.19
CLK3-214ENST00000564096 PMM2O15305 246 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 XPOTO43592 962 aaKnown RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 RECQL4O94761 1208 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 TNNC2P02585 160 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 PTMAP06454 111 aaKnown RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 TRIM21P19474 475 aaKnown RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 EN2P19622 333 aaPredicted RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 GCLMP48507 274 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 MCCD1P59942 119 aaPredicted RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 CLDN10P78369 228 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 BIRC3Q13489 604 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 MBTPS1Q14703 1052 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 SYCP1Q15431 976 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 EXOC3L4Q17RC7 722 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 SEZ6Q53EL9 994 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 UBXN11Q5T124 520 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 UBE2Q1Q7Z7E8 422 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 CCDC150Q8NCX0 1101 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 CACTINQ8WUQ7 758 aaKnown RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 SNX27Q96L92 541 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 RPS6KC1Q96S38 1066 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 HTATIP2Q9BUP3 242 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 NUP58Q9BVL2 599 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 APOL6Q9BWW8 343 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 IMPG2Q9BZV3 1241 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 PDE11AQ9HCR9 933 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 UBN1Q9NPG3 1134 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 PARP2Q9UGN5 583 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 DERAQ9Y315 318 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 R3HCC1Q9Y3T6 440 aaKnown RBP13.88□□□□□ -0.19
CLK3-214ENST00000564096 C2CD2Q9Y426 696 aa13.88□□□□□ -0.19
CLK3-214ENST00000564096 KIAA0355O15063 1070 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 TEX33O43247 280 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 NBNO60934 754 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PHACTR2O75167 634 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 CLSTN1O94985 981 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 CXCL10P02778 98 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PFKMP08237 780 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 ITGA4P13612 1032 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 RAG1P15918 1043 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 RFX1P22670 979 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PIK3CAP42336 1068 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 GSDMDP57764 484 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 DLG4P78352 724 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 DSC3Q14574 896 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 TMEM132DQ14C87 1099 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PLEKHG4Q58EX7 1191 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PPFIBP1Q86W92 1011 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 TMEM199Q8N511 208 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 NEK11Q8NG66 645 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 PDLIM2Q96JY6 352 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 ADAM2Q99965 735 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 WNT8AQ9H1J5 351 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 TMX1Q9H3N1 280 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 SNTG2Q9NY99 539 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 UMODL1Q5DID0 1318 aa13.87□□□□□ -0.19
CLK3-214ENST00000564096 A0A0U1RQF3 1178 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 TTC26A0AVF1 554 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 NRDCO43847 1150 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CYP2C18P33260 490 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 PBX1P40424 430 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CCL23P55773 120 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 TFAMQ00059 246 aaKnown RBP13.86□□□□□ -0.19
CLK3-214ENST00000564096 PPP3CAQ08209 521 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 DUOXA2Q1HG44 320 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CBWD6Q4V339 395 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CBWD3Q5JTY5 395 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CBWD5Q5RIA9 395 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 SLC24A5Q71RS6 500 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 SPC24Q8NBT2 197 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 FBXL13Q8NEE6 735 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 PLEKHO2Q8TD55 490 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 RSPH1Q8WYR4 309 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 KIF12Q96FN5 646 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 LSM14BQ9BX40 385 aaKnown RBP13.86□□□□□ -0.19
CLK3-214ENST00000564096 MTMR12Q9C0I1 747 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 TMEM117Q9H0C3 514 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 TSPYL2Q9H2G4 693 aaPredicted RBP13.86□□□□□ -0.19
CLK3-214ENST00000564096 RGS18Q9NS28 235 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 CNTN3Q9P232 1028 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 GIT1Q9Y2X7 761 aa13.86□□□□□ -0.19
CLK3-214ENST00000564096 RALGAPA2Q2PPJ7 1873 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 LACTBL1A8MY62 500 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 ZNF623O75123 536 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 ZC3H11AO75152 810 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLK3-214ENST00000564096 TIMP1P01033 207 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 NFICP08651 508 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 TRPC3Q13507 836 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 SLC10A6Q3KNW5 377 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 ZACNQ401N2 412 aa13.85□□□□□ -0.19
CLK3-214ENST00000564096 FIGNQ5HY92 759 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms