RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ATP2B3Q16720 1220 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 RABL3Q5HYI8 236 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 DACT2Q5SW24 774 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 CPA6Q8N4T0 437 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 OR2I1PQ8NGU4 316 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 EXTL1Q92935 676 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 SLC2A13Q96QE2 648 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 SMAD5Q99717 465 aaKnown RBP4.39□□□□□ -1.71
VPS35-203ENST00000562420 NDC1Q9BTX1 674 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 CHMP4AQ9BY43 222 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 FANCIQ9NVI1 1328 aa4.39□□□□□ -1.71
VPS35-203ENST00000562420 GAGE12BA1L429 117 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 GAGE12HA6NDE8 117 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 PLSCR1O15162 318 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 DTNBO60941 627 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 ALDH1L1O75891 902 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 RECQL4O94761 1208 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 ABLIM3O94929 683 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 EDNRBP24530 442 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 AKAP5P24588 427 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 FXR1P51114 621 aaKnown RBP eCLIP4.38□□□□□ -1.71
VPS35-203ENST00000562420 CTXN1P60606 82 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 MCL1Q07820 350 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 RAB39AQ14964 217 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 ODF1Q14990 250 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 TTF1Q15361 905 aaPredicted RBP4.38□□□□□ -1.71
VPS35-203ENST00000562420 NRN1LQ496H8 165 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 AFMIDQ63HM1 303 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 EFCAB12Q6NXP0 572 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 SPRED1Q7Z699 444 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 PLXDC1Q8IUK5 500 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 ANKRD13AQ8IZ07 590 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 REPS2Q8NFH8 660 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 OR10H5Q8NGA6 315 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 TFAP2CQ92754 450 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 ZNF747Q9BV97 191 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 CALCOCO1Q9P1Z2 691 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 AJAP1Q9UKB5 411 aaPredicted RBP4.38□□□□□ -1.71
VPS35-203ENST00000562420 CHST2Q9Y4C5 530 aa4.38□□□□□ -1.71
VPS35-203ENST00000562420 SLC16A6O15403 523 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 AMHP03971 560 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 AMY1AP04745 511 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 ALAS1P13196 640 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 ATP5JP18859 108 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 HK1P19367 917 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 DDCP20711 480 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 PTMSP20962 102 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 TACR2P21452 398 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 ALDH1A3P47895 512 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 ZXDAP98168 799 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 KIF23Q02241 960 aaPredicted RBP4.37□□□□□ -1.71
VPS35-203ENST00000562420 PIN1Q13526 163 aaPredicted RBP4.37□□□□□ -1.71
VPS35-203ENST00000562420 CSRP2Q16527 193 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 ATXN7L2Q5T6C5 722 aaPredicted RBP4.37□□□□□ -1.71
VPS35-203ENST00000562420 ANKS6Q68DC2 871 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 MIER2Q8N344 545 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 NSUN6Q8TEA1 469 aaKnown RBP4.37□□□□□ -1.71
VPS35-203ENST00000562420 LENG9Q96B70 501 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 MRI1Q9BV20 369 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 SLC46A2Q9BY10 475 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 VPS11Q9H270 941 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 TDP1Q9NUW8 608 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 INTUQ9ULD6 942 aa4.37□□□□□ -1.71
VPS35-203ENST00000562420 CCDC154A6NI56 674 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 SUV39H1O43463 412 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 C1SP09871 688 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 ZSCAN20P17040 1043 aaPredicted RBP4.36□□□□□ -1.71
VPS35-203ENST00000562420 PCSK1P29120 753 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 PTGS2P35354 604 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 TARDBPQ13148 414 aaKnown RBP eCLIP4.36□□□□□ -1.71
VPS35-203ENST00000562420 TUBA3CQ13748 450 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 ARMC6Q6NXE6 501 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 TUBA3EQ6PEY2 450 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 RHOUQ7L0Q8 258 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 TTC7BQ86TV6 843 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 XYLT1Q86Y38 959 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 RHOT1Q8IXI2 618 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 PRR18Q8N4B5 295 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 PPM1NQ8N819 430 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 NLGN4YQ8NFZ3 816 aaPredicted RBP4.36□□□□□ -1.71
VPS35-203ENST00000562420 SLC35B2Q8TB61 432 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 IFI44Q8TCB0 444 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 HSPBAP1Q96EW2 488 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 MRGPRX4Q96LA9 322 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 SERPINB13Q9UIV8 391 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 PNMA8BQ9ULN7 279 aaPredicted RBP4.36□□□□□ -1.71
VPS35-203ENST00000562420 LIMCH1Q9UPQ0 1083 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 ANKRD6Q9Y2G4 727 aa4.36□□□□□ -1.71
VPS35-203ENST00000562420 LUC7L2Q9Y383 392 aaKnown RBP4.36□□□□□ -1.71
VPS35-203ENST00000562420 MYBBP1AQ9BQG0 1328 aaKnown RBP4.36□□□□□ -1.71
VPS35-203ENST00000562420 FZD7O75084 574 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 RFPL1O75677 317 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 ARIH2O95376 493 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 POMCP01189 267 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 FSHBP01225 129 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SPATA31D3P0C874 917 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 RAP2AP10114 183 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 FPR1P21462 350 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SLC25A3Q00325 362 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 PLEKHG6Q3KR16 790 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms