RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TMEM134Q9H6X4 195 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 BLOC1S4Q9NUP1 217 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 CLIC4Q9Y696 253 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 CITO14578 2027 aa19.49■□□□□ 0.71
HDDC3-205ENST00000559898 CCDC195A0A1B0GUA6 201 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 VPS37CA5D8V6 355 aaPredicted RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 SPDYE4A6NLX3 237 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 NR1I2O75469 434 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 ADH1AP07327 375 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 PROZP22891 400 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 GUCY2CP25092 1073 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 VCPP55072 806 aaKnown RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 DMP1Q13316 513 aaPredicted RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 DHX8Q14562 1220 aaKnown RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 KARSQ15046 597 aaKnown RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 SF3A1Q15459 793 aaKnown RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 DCAF4L1Q3SXM0 396 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 SPECC1Q5M775 1068 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 FAM171A1Q5VUB5 890 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 LILRA6Q6PI73 481 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 RSPO2Q6UXX9 243 aaPredicted RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 CEP57Q86XR8 500 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 TMEM161BQ8NDZ6 487 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 LNX1Q8TBB1 728 aaPredicted RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 PBXIP1Q96AQ6 731 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 CLSTN3Q9BQT9 956 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 NR2E1Q9Y466 385 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.48■□□□□ 0.71
HDDC3-205ENST00000559898 STK24Q9Y6E0 443 aa19.48■□□□□ 0.71
HDDC3-205ENST00000559898 DOCK8Q8NF50 2099 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 SMIM28A0A1B0GU29 152 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 GLUD1P00367 558 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 GRM5P41594 1212 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 BRCC3P46736 316 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 SIGLEC14Q08ET2 396 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 MCM6Q14566 821 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 ZNF568Q3ZCX4 644 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 ARL6IP4Q66PJ3 421 aaKnown RBP19.47■□□□□ 0.71
HDDC3-205ENST00000559898 ALKAL1Q6UXT8 129 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 C18orf25Q96B23 403 aaPredicted RBP19.47■□□□□ 0.71
HDDC3-205ENST00000559898 DRC1Q96MC2 740 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 BACH2Q9BYV9 841 aa19.47■□□□□ 0.71
HDDC3-205ENST00000559898 MAPTP10636 758 aaKnown RBP19.46■□□□□ 0.71
HDDC3-205ENST00000559898 PLS3P13797 630 aa19.46■□□□□ 0.71
HDDC3-205ENST00000559898 TDRD5Q8NAT2 981 aaKnown RBP19.46■□□□□ 0.71
HDDC3-205ENST00000559898 MRPL4Q9BYD3 311 aaKnown RBP19.46■□□□□ 0.71
HDDC3-205ENST00000559898 FNIP2Q9P278 1114 aa19.46■□□□□ 0.71
HDDC3-205ENST00000559898 STK39Q9UEW8 545 aa19.46■□□□□ 0.71
HDDC3-205ENST00000559898 SF3B1O75533 1304 aaKnown RBP eCLIP19.46■□□□□ 0.71
HDDC3-205ENST00000559898 PLCG1P19174 1290 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 RESTQ13127 1097 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 PTPAQ15257 358 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 PSMD5Q16401 504 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 XKR4Q5GH76 650 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 BMP8AQ7Z5Y6 402 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 ZDHHC14Q8IZN3 488 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 PRSS33Q8NF86 280 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 RSAD2Q8WXG1 361 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 SNX27Q96L92 541 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 MYADMQ96S97 322 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 REEP2Q9BRK0 252 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 NTPCRQ9BSD7 190 aaKnown RBP19.45■□□□□ 0.7
HDDC3-205ENST00000559898 TTPALQ9BTX7 342 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 ANKFY1Q9P2R3 1169 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 SSX2IPQ9Y2D8 614 aa19.45■□□□□ 0.7
HDDC3-205ENST00000559898 MUC6Q6W4X9 2439 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 NOTCH4Q99466 2003 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 TKTP29401 623 aaKnown RBP19.44■□□□□ 0.7
HDDC3-205ENST00000559898 MARCKSP29966 332 aaPredicted RBP19.44■□□□□ 0.7
HDDC3-205ENST00000559898 NTHL1P78549 312 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 SPAG1Q07617 926 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 UPP1Q16831 310 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 ZBTB41Q5SVQ8 909 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 MPZL3Q6UWV2 235 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 GPBP1Q86WP2 473 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 CMASQ8NFW8 434 aaPredicted RBP19.44■□□□□ 0.7
HDDC3-205ENST00000559898 SPIRE2Q8WWL2 714 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 PIK3R5Q8WYR1 880 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 SMG7Q92540 1137 aaKnown RBP19.44■□□□□ 0.7
HDDC3-205ENST00000559898 EPSTI1Q96J88 318 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 CDK5RAP3Q96JB5 506 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 CLIC6Q96NY7 704 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 PHOX2BQ99453 314 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 NT5C3AQ9H0P0 336 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 IKZF4Q9H2S9 585 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 SORCS3Q9UPU3 1222 aa19.44■□□□□ 0.7
HDDC3-205ENST00000559898 B3GAT3O94766 335 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 MCF2P10911 925 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 SYT1P21579 422 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 TNFSF9P41273 254 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 SLC10A6Q3KNW5 377 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 C15orf39Q6ZRI6 1047 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 CCDC149Q6ZUS6 474 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 BRAPQ7Z569 592 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 TCHPQ9BT92 498 aa19.43■□□□□ 0.7
HDDC3-205ENST00000559898 NARSO43776 548 aaKnown RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 FGFR3P22607 806 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 NCKAP1LP55160 1127 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 CEBPZQ03701 1054 aaKnown RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 FBXL6Q8N531 539 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms