RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SLC7A3Q8WY07 619 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 STAMQ92783 540 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 TMEM143Q96AN5 459 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 ARHGEF3Q9NR81 526 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 WRAP73Q9P2S5 460 aaPredicted RBP12.61□□□□□ -0.39
VPS33B-204ENST00000554660 HPSEQ9Y251 543 aa12.61□□□□□ -0.39
VPS33B-204ENST00000554660 POTEMA6NI47 508 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 EML1O00423 815 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 SRGAP2CP0DJJ0 459 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 SCNN1GP51170 649 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 PSMC5P62195 406 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 NONOQ15233 471 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 CT47A1Q5JQC4 288 aaPredicted RBP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 POTEGQ6S5H5 508 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 NYAP1Q6ZVC0 841 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 PALB2Q86YC2 1186 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 DCLK2Q8N568 766 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 SMG8Q8ND04 991 aaKnown RBP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 PRPF31Q8WWY3 499 aaKnown RBP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 ZFP42Q96MM3 310 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 GAD1Q99259 594 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 JPH2Q9BR39 696 aaPredicted RBP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 EIF2AQ9BY44 585 aaKnown RBP12.6□□□□□ -0.39
VPS33B-204ENST00000554660 FOXQ1Q9C009 403 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 PIDD1Q9HB75 910 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 DLGAP2Q9P1A6 1054 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 KANSL3Q9P2N6 904 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 HES2Q9Y543 173 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 IPPQ9Y573 584 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 NUMBLQ9Y6R0 609 aa12.6□□□□□ -0.39
VPS33B-204ENST00000554660 RIOK3O14730 519 aaKnown RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 CBFA2T2O43439 604 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 SLC37A4O43826 429 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 CUTAO60888 179 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 LRRN2O75325 713 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 ZNF202O95125 648 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 EFEMP2O95967 443 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 SP9P0CG40 484 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 ITGA4P13612 1032 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 TNNT1P13805 278 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 GLULP15104 373 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 IFNAR1P17181 557 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 RPL17P18621 184 aaKnown RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 NDUFA8P51970 172 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 LAMTOR4Q0VGL1 99 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 HTR4Q13639 388 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 KIAA0319Q5VV43 1072 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 ELMSAN1Q6PJG2 1045 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 SRGAP1Q7Z6B7 1085 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 RNF149Q8NC42 400 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 PSPC1Q8WXF1 523 aaKnown RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 CEP170P1Q96L14 293 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 APOL6Q9BWW8 343 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 RNF39Q9H2S5 420 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 SEMA4AQ9H3S1 761 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 RXFP1Q9HBX9 757 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 DDX25Q9UHL0 483 aaKnown RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 HOOK1Q9UJC3 728 aaKnown RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 VAV3Q9UKW4 847 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 PCDHA4Q9UN74 947 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 SIT1Q9Y3P8 196 aa12.59□□□□□ -0.39
VPS33B-204ENST00000554660 EP300Q09472 2414 aaPredicted RBP12.59□□□□□ -0.39
VPS33B-204ENST00000554660 DOCK8Q8NF50 2099 aa12.58□□□□□ -0.39
VPS33B-204ENST00000554660 ARID2Q68CP9 1835 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CYP3A7-CYP3A51PA0A087WV96 503 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 ARL5CA6NH57 179 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 TGM5O43548 720 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 TSPAN1O60635 241 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 ERLIN2O94905 339 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 LAMP2P13473 410 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CYP3A7P24462 503 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 QARSP47897 775 aaKnown RBP12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CCZ1BP86790 482 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CCZ1P86791 482 aaPredicted RBP12.58□□□□□ -0.4
VPS33B-204ENST00000554660 DSG1Q02413 1049 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 DSC1Q08554 894 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 TRIM29Q14134 588 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 EMC2Q15006 297 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 PTPAQ15257 358 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 DCLRE1AQ6PJP8 1040 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 ZC3H14Q6PJT7 736 aaKnown RBP12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CYP26C1Q6V0L0 522 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 C17orf53Q8N3J3 647 aaPredicted RBP12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CCDC112Q8NEF3 446 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 PJA1Q8NG27 643 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 RABGGTAQ92696 567 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CPB2Q96IY4 423 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 MBOAT7Q96N66 472 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 RHOBTB2Q9BYZ6 727 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 NT5C3AQ9H0P0 336 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 DHX33Q9H6R0 707 aaKnown RBP12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CACNG4Q9UBN1 327 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 DPP7Q9UHL4 492 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 SSX2IPQ9Y2D8 614 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 CLIC4Q9Y696 253 aa12.58□□□□□ -0.4
VPS33B-204ENST00000554660 ANHXE9PGG2 379 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 M0R2N6 131 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 DTNBO60941 627 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 PFKFB1P16118 471 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 RFC5P40937 340 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms