RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 GPRC5BQ9NZH0 403 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 SORCS3Q9UPU3 1222 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 SHROOM4Q9ULL8 1493 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 DRGXA6NNA5 263 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 AHRRA9YTQ3 701 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA12O60330 932 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 GPR32O75388 356 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 KATNA1O75449 491 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 SCAF4O95104 1147 aaKnown RBP4.43□□□□□ -1.7
VRK1-202ENST00000553683 POMCP01189 267 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 FSHBP01225 129 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 ADH4P08319 380 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 LAG3P18627 525 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 ATP5JP18859 108 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 VCAM1P19320 739 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 RECQLP46063 649 aaPredicted RBP4.43□□□□□ -1.7
VRK1-202ENST00000553683 CTXN1P60606 82 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 DGCR2P98153 550 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 CDC42EP1Q00587 391 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 NHLH2Q02577 135 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 DPTQ07507 201 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 MTM1Q13496 603 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 TMEM240Q5SV17 173 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 AGAP9Q5VTM2 703 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 EFCAB2Q5VUJ9 269 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 AFMIDQ63HM1 303 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 METRNLQ641Q3 311 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 LRRC55Q6ZSA7 311 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 MRGPREQ86SM8 312 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 RHOT2Q8IXI1 618 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 NLGN4YQ8NFZ3 816 aaPredicted RBP4.43□□□□□ -1.7
VRK1-202ENST00000553683 SLC35B2Q8TB61 432 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 CPT1CQ8TCG5 803 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 NRG4Q8WWG1 115 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PGBD4Q96DM1 585 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 MRI1Q9BV20 369 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 TCF7L1Q9HCS4 588 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 CALCOCO1Q9P1Z2 691 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 POGKQ9P215 609 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 DKK2Q9UBU2 259 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.43□□□□□ -1.7
VRK1-202ENST00000553683 DNM3Q9UQ16 869 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 IPPQ9Y573 584 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA9Q9Y5G4 932 aaKnown RBP4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA8Q9Y5G5 932 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA7Q9Y5G6 932 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA6Q9Y5G7 932 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PCDHGA3Q9Y5H0 932 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 HS3ST4Q9Y661 456 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 TNKSO95271 1327 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 PNPLA7Q6ZV29 1317 aa4.43□□□□□ -1.7
VRK1-202ENST00000553683 TMEM191CA6NGB0 347 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 TMEM200CA6NKL6 621 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 MT-CO1P00395 513 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 DDCP20711 480 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 C5AR1P21730 350 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 APOBEC3AP31941 199 aaPredicted RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 BLOC1S1P78537 153 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 MXRA7P84157 204 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 RAB39AQ14964 217 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 ABCB5Q2M3G0 1257 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 LY6G5CQ5SRR4 150 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 PNMA8AQ86V59 439 aaPredicted RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 SYT12Q8IV01 421 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 REPS2Q8NFH8 660 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 OR2I1PQ8NGU4 316 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 FUBP1Q96AE4 644 aaKnown RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 COA7Q96BR5 231 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 TEKT5Q96M29 485 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 CCDC8Q9H0W5 538 aaPredicted RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 MMRN2Q9H8L6 949 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 TUBD1Q9UJT1 453 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 AJAP1Q9UKB5 411 aaPredicted RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 INTUQ9ULD6 942 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 ATP11BQ9Y2G3 1177 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 HS3ST3A1Q9Y663 406 aa4.42□□□□□ -1.7
VRK1-202ENST00000553683 CFAP20Q9Y6A4 193 aaKnown RBP4.42□□□□□ -1.7
VRK1-202ENST00000553683 hCG_2014768A0A024R1R8 64 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 MARCH11A6NNE9 402 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 LEFTY2O00292 366 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 HTRA2O43464 458 aaPredicted RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 XPOTO43592 962 aaKnown RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 FAM20BO75063 409 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 AMY1AP04745 511 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 NR4A1P22736 598 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 GCSHP23434 173 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 CCND1P24385 295 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 INHBCP55103 352 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 ANAPC15P60006 121 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 UBXN2BQ14CS0 331 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 ACAP2Q15057 778 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 PCBP2Q15366 365 aaKnown RBP eCLIP4.41□□□□□ -1.7
VRK1-202ENST00000553683 PTPN21Q16825 1174 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 BEAN1Q3B7T3 259 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 TIGD2Q4W5G0 525 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 BRDTQ58F21 947 aaPredicted RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 ARHGEF19Q8IW93 802 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 RPUSD2Q8IZ73 545 aaKnown RBP4.41□□□□□ -1.7
VRK1-202ENST00000553683 CHMP4CQ96CF2 233 aa4.41□□□□□ -1.7
VRK1-202ENST00000553683 GPATCH3Q96I76 525 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms